| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,040,059 – 2,040,114 |
| Length | 55 |
| Max. P | 0.812066 |
| Location | 2,040,059 – 2,040,114 |
|---|---|
| Length | 55 |
| Sequences | 4 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 83.03 |
| Shannon entropy | 0.27803 |
| G+C content | 0.29545 |
| Mean single sequence MFE | -6.12 |
| Consensus MFE | -6.32 |
| Energy contribution | -5.83 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.44 |
| Mean z-score | -0.63 |
| Structure conservation index | 1.03 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.812066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2040059 55 - 27905053 GAAACCACUAUUUAUAGAAGUCUACGUUUUGCGAUGACUUACACAUUUUUUUAAG .................(((((..((.....))..)))))............... ( -5.80, z-score = -1.10, R) >droEre2.scaffold_4770 2281575 55 - 17746568 UAAGCCCAUAUUUAUACAAGUCUGCACUUGGUGUUGAUUAAUACUUUUUUUCAAG ................(((((....)))))...((((..((.....))..)))). ( -5.10, z-score = 0.33, R) >droSec1.super_6 2126249 55 - 4358794 UAAACCACUAUUUAUAGAAGUCUUCAUUUGGUGAUGACUUACACAUUUUUUUAAG .................(((((.((((...)))).)))))............... ( -6.80, z-score = -0.87, R) >droSim1.chr3R 2056074 55 - 27517382 UAAACCACUUUUUACAGAAGUCUUCAUUUGGUGAUGACUUACACAUUUUUUUAAG .................(((((.((((...)))).)))))............... ( -6.80, z-score = -0.87, R) >consensus UAAACCACUAUUUAUAGAAGUCUUCAUUUGGUGAUGACUUACACAUUUUUUUAAG .................(((((.((((...)))).)))))............... ( -6.32 = -5.83 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:07 2011