| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,984,116 – 1,984,229 |
| Length | 113 |
| Max. P | 0.765113 |
| Location | 1,984,116 – 1,984,229 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.88 |
| Shannon entropy | 0.14044 |
| G+C content | 0.47033 |
| Mean single sequence MFE | -33.58 |
| Consensus MFE | -26.94 |
| Energy contribution | -27.26 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.765113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1984116 113 + 27905053 CGGACAACUUCCUGUCCAGAUAGCAAAGGUUACAGUAACUCAUUCAGUCGUCAGUGGAAAUGUGC------GGCCAGCAUGAGUUGGCCAAUAAAGAAUGUCUGAUGUGCAUUUUCCCC- .(((((......))))).((..((...(((((...)))))......))..))...(((((((..(------(((((((....))))))).....((.....))...)..)))))))...- ( -32.50, z-score = -1.64, R) >droEre2.scaffold_4770 2243174 114 + 17746568 CGGACAGCUUCCUGUCCAGAUAGCAAAGGUUACAGCAACGCAUCUAGUCGUCAGUGAAAAUGUGC------GGCCAGUAUGAGUUGGCCCAUAAAGAAUGUCUGAUGUGCAGUUCCCCAA .((((((....))))))..........((..((.((...(((((.((.((((.((....))(((.------((((((......)))))))))...).))).))))))))).))..))... ( -32.50, z-score = -1.39, R) >droYak2.chr3R 17928450 119 + 28832112 CGGACAACUUCCUGUCCAGAUAGCAAAGGUAAAAGUAACUCAUUCAGUCGUCGGUGGAAAUGUGCCAGCAUGGCCAGCAUGAGUUGGCCAAUAAAGAAUGUCUGAUGUGUAUUUUCCCC- .(((((......)))))..........((..((((((...(((.(((.(((((.(((.......))).).((((((((....)))))))).....).))).))))))..))))))..))- ( -37.10, z-score = -2.77, R) >droSec1.super_6 2084769 113 + 4358794 CGGACAACUUCCUGUCCCGAUAGCAAAGGUUACAGUAACUCAUUCAGUCGUCAGUGAAAAUGUGC------GGCCAGCAUGAGUUGGCCAAUAAAGAAUGUCUGAUGUGCAUUUUCCCC- .(((((......)))))((((.(....(((((...)))))....).)))).....(((((((..(------(((((((....))))))).....((.....))...)..)))))))...- ( -32.80, z-score = -2.22, R) >droSim1.chr3R 2014385 113 + 27517382 CGGACAACUUCCUGUCCAGAUAGCAAAGGUUACAGUAACUCAUUCAGUCGUCAGUGAAAAUGUGC------GGCCAGCAUGAGUUGGCCAAUAAAGAAUGUCUGAUGUGCAUUUUCCCC- .(((((......))))).((..((...(((((...)))))......))..))...(((((((..(------(((((((....))))))).....((.....))...)..)))))))...- ( -33.00, z-score = -2.27, R) >consensus CGGACAACUUCCUGUCCAGAUAGCAAAGGUUACAGUAACUCAUUCAGUCGUCAGUGAAAAUGUGC______GGCCAGCAUGAGUUGGCCAAUAAAGAAUGUCUGAUGUGCAUUUUCCCC_ .(((((......))))).((..((...((((.....))))......))..))...(((((((..(......(((((((....))))))).....((.....))...)..))))))).... (-26.94 = -27.26 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:06 2011