| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,977,891 – 1,977,983 |
| Length | 92 |
| Max. P | 0.627535 |
| Location | 1,977,891 – 1,977,983 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 79.10 |
| Shannon entropy | 0.38257 |
| G+C content | 0.42490 |
| Mean single sequence MFE | -22.23 |
| Consensus MFE | -13.30 |
| Energy contribution | -13.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.627535 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1977891 92 + 27905053 UUUCAUUUGACAAUUAACAUUUCCGUUAGUUGGCCAACUUUGGUGGCGUCUGCUUUA--------GCUAAUGAACCAAGUUGGUCCGAACCGAACCAAUC .(((.((((.((((((((......))))))))((((((((.(((..(((..((....--------))..))).))))))))))).))))..)))...... ( -26.90, z-score = -2.95, R) >droAna3.scaffold_13340 5535976 87 - 23697760 UUUCAUUUGACAAUUAACAUUUCCGUUAGUUGGCCAACUUUGGUGGCGUCUGCUUUG--------GCUAAUGAACCAAGUCCGACCGAUACGAUG----- ..........((((((((......))))))))((((.(....)))))(((.(.((((--------(........))))).).)))..........----- ( -19.00, z-score = -0.50, R) >droWil1.scaffold_181130 5345011 91 - 16660200 UUUCAUUUGACAAUUAACAUUUCCGUUAGUUGGCCAACUUUGGUGACGUCUGCUUUG--------GCUAAUGAACCAGAGGAGCCGCAACUCACCUAUC- ......(((.((((((((......))))))))..)))....(((((((.((.(((((--------(........)))))).)).))....)))))....- ( -25.20, z-score = -2.43, R) >droVir3.scaffold_12822 2184243 94 - 4096053 UUUCAUUUGACAAUUAACAUUUCCGUUAGUUGGCCAACUUUGGUGCCGUCUGCUUUGCUGCUUUGGCUAAUGAACCGCUUUCCAGCCAGAUUGC------ ..........((((((((......))))))))((((....))))((.(((((....((((....(((.........)))...))))))))).))------ ( -22.60, z-score = -0.93, R) >droMoj3.scaffold_6540 11254061 86 + 34148556 UUUCAUUUGACAAUUAACAUUUCCGUUAGUUGGCCAACUUUGGUGGCGUCUGCUUUA--------AAUAAUGAACCGCUUUUCAGCCAACAGAG------ ......(((.((((((((......))))))))..)))(((((.((((....((((((--------.....))))..))......)))).)))))------ ( -18.70, z-score = -1.34, R) >droGri2.scaffold_14624 1343735 86 - 4233967 UUUCAUUUGACAAUUAACAUUUCCGUUAGUUGGCCAACUUUGGUGCUGUCUGCUUUG--------GCUAAUGAACUGUUUUCCAGCCAAGCAAC------ ..........((((((((......))))))))((((....))))......(((((.(--------(((...(((.....))).)))))))))..------ ( -21.00, z-score = -1.41, R) >consensus UUUCAUUUGACAAUUAACAUUUCCGUUAGUUGGCCAACUUUGGUGGCGUCUGCUUUG________GCUAAUGAACCAAUUUCCACCCAACCGAC______ .((((((...((((((((......))))))))((((....))))........................)))))).......................... (-13.30 = -13.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:04 2011