| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,964,436 – 1,964,554 |
| Length | 118 |
| Max. P | 0.960022 |
| Location | 1,964,436 – 1,964,554 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.29 |
| Shannon entropy | 0.36673 |
| G+C content | 0.48960 |
| Mean single sequence MFE | -34.32 |
| Consensus MFE | -22.30 |
| Energy contribution | -24.14 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.960022 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1964436 118 - 27905053 CGGAGUAUAUGAGU-GUGUGAGUAUGUAAGUC-CAGGAGUGGGAGUGGUGGGGUAAAAAAGGUUAAAAGGUGCCAUCGUGGCACUCAAAAGCCGGGCAACAUAGUUUAGCACUUUGCUCC .((((((...((((-((..((.(((((..(((-(.((..(..(((((.((.(((......(((........)))))).)).)))))..)..)))))).))))).))..)))))))))))) ( -39.30, z-score = -3.63, R) >droSim1.chr3R 1992007 118 - 27517382 CGGAGUAUGUGAGU-GUGUGAGUAUGAGAGUC-CAGGAGUGGGAGUGGUGGGGUAAAAAAGGUUAAAAGGUGCCAUCGUGGCACUCAAAAGCCGGGCAACAUAGUUUAGCACUUUGCUCC .((((((...((((-((..((.((((...(((-(.((..(..(((((.((.(((......(((........)))))).)).)))))..)..))))))..)))).))..)))))))))))) ( -38.00, z-score = -2.92, R) >droSec1.super_6 2065063 118 - 4358794 CGGAGUAUGUGAGU-GUGUGAGUAUGAGAGUC-CAGGAGUGGUAGUGGUGGGGUAAAAAAGGUUAAAAGGUGCCAUCGUGGCACUCCAAAGCCGGGCAACAUAGUUUAGCACUUUGCUCC .((((((...((((-((..((.((((...(((-(.((..(((.((((.((.(((......(((........)))))).)).)))))))...))))))..)))).))..)))))))))))) ( -38.30, z-score = -2.57, R) >droYak2.chr3R 17907238 110 - 28832112 --------AAGAGUGGUGUGUGUGUGUGAGUCAGAGGAGUGGGAGU--UGGGUAAAAAAAGGUUAAAAGGUGCCAUCGUGGCACUCAAAAGCCGGGCAACAUAGUUUAGCACUUUGCUCC --------..(((..(.((((.(((((..(((.............(--(......))...((((....((((((.....))))))....)))).))).))))).....)))).)..))). ( -28.10, z-score = -0.53, R) >droAna3.scaffold_13340 5523665 89 + 23697760 -------------------------------AAGGGAAGUGCCAGGAGCUUGGGAAAAAAGGUUAAAAGGUGCCAUCGUGGUACUCAAAAGCCGGGCAACAUAGUUUAGCACUUUGCUGC -------------------------------.((.(((((((...(((((..........((((....((((((.....))))))....)))).(....)..))))).))))))).)).. ( -27.90, z-score = -1.57, R) >consensus CGGAGUAUAUGAGU_GUGUGAGUAUGAGAGUC_CAGGAGUGGGAGUGGUGGGGUAAAAAAGGUUAAAAGGUGCCAUCGUGGCACUCAAAAGCCGGGCAACAUAGUUUAGCACUUUGCUCC ...................................(((((((.((((.((((.((.....((((....((((((.....))))))....)))).(....).)).)))).))))))))))) (-22.30 = -24.14 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:03 2011