| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,951,262 – 1,951,357 |
| Length | 95 |
| Max. P | 0.814150 |
| Location | 1,951,262 – 1,951,357 |
|---|---|
| Length | 95 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.66 |
| Shannon entropy | 0.38218 |
| G+C content | 0.38090 |
| Mean single sequence MFE | -18.58 |
| Consensus MFE | -14.37 |
| Energy contribution | -14.95 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.814150 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1951262 95 - 27905053 ------------------------UUUUAUUUUCACUUUUCCUUCUCGCAUGGCUUAGAACGAGCCAAAUUGCAUUCAGCUGUUUGUUUUUAUGCGCUGUCACGAGAAUUCCAAACUAC ------------------------..................((((((((((((((.....))))))...)))...((((.((.((....)).))))))....)))))........... ( -19.80, z-score = -1.69, R) >droSim1.chr3R 1978580 95 - 27517382 ------------------------CUCUAUUUUCACUUUUCCUUCUCGCAUGGCUUAGAACGAGCCAAAUUGCAUUCAGCUGUUUGUUUUUAUGCGCUGUCACGAGAAUUCCAAACUAC ------------------------..................((((((((((((((.....))))))...)))...((((.((.((....)).))))))....)))))........... ( -19.80, z-score = -1.61, R) >droSec1.super_6 2052199 95 - 4358794 ------------------------CUCUAUUUUCACUUUUCCUUCUCGCAUGGCUUAGAACGAGCCAAAUUGCAUUCAGCUGUUUGUUUUUAUGCGCUGUCACGAGAAUUCCAAACUAC ------------------------..................((((((((((((((.....))))))...)))...((((.((.((....)).))))))....)))))........... ( -19.80, z-score = -1.61, R) >droYak2.chr3R 17894352 94 - 28832112 ------------------------CUAUAUUUUCACUUUUCCUUCUCGCAUGGCUUAGAAUGAGCCAAAUUGCAUUCAGCUGUUUG-UUUUAUGCGCUGUCACGAGAAUUCCAAACUAC ------------------------..................((((((..((((((.....))))))....((((..(((.....)-))..)))).......))))))........... ( -20.30, z-score = -1.75, R) >droEre2.scaffold_4770 2210702 101 - 17746568 ------------------CUAUAUUUUCACUUUUCAUUUUCCCUCUCGCAUGGCUUAGAAUGAGCCAAAUUGCAUUCAGCUGUUUGUUUUUAUGCGCUGUCACGAGAAUUCCAAACUAC ------------------.........................(((((((((((((.....))))))...)))...((((.((.((....)).))))))....))))............ ( -19.30, z-score = -1.41, R) >droAna3.scaffold_13340 5511703 92 + 23697760 ---------------------------UAUUUUCACUUUUCCUUCUCGCAUGGCUUAGAAUCAGCCAAAUUGCAUUCAGCUGUUUGUUUUUAUGCGCUGUCACGAGAAUUCCAAACUAC ---------------------------...............(((((((((((((.......)))))...)))...((((.((.((....)).))))))....)))))........... ( -18.00, z-score = -1.38, R) >dp4.chr2 14937667 97 + 30794189 ----------------------GCUUUUAUUUUCACUUUUCUUUCUCGCAUGGCUUAGAAUGAGCCAAAUUGCAUUCAGCUGUUUGUUUUUAUGCGCUGUCACGAGAAUUCCAAACUAC ----------------------....................((((((((((((((.....))))))...)))...((((.((.((....)).))))))....)))))........... ( -20.10, z-score = -1.31, R) >droPer1.super_0 4556162 96 - 11822988 -----------------------CUUUUAUUUUCACUUUUCUUUCUCGCAUGGCUUAGAAUGAGCCAAAUUGCAUUCAGCUGUUUGUUUUUAUGCGCUGUCACGAGAAUUCCAAACUAC -----------------------...................((((((((((((((.....))))))...)))...((((.((.((....)).))))))....)))))........... ( -20.10, z-score = -1.61, R) >droWil1.scaffold_181130 5312375 119 + 16660200 GUUUUAUUUUCACUUUUCGUCUUCUUCUAUGUCUUGUUCUUCUUCUCCUUGGGCUUAGAAUGAGCCAAAUUGCAUUCAGCUGUUUGUUUUUAUGCGCUGUCACGAAAAUUCCAAACUAC ((((.((((((.......(.(((.(((((.((((................)))).))))).))).).....((((..(((.....)))...))))........))))))...))))... ( -18.99, z-score = -0.92, R) >droMoj3.scaffold_6540 11227594 83 - 34148556 ------------------------------------UUAUUUUGCACAAUUCAUUUUCUCAUUUUCAAAUUGCAUUCAGCUGUUUGUGUUUAAGCGCUGUCAUGGUUAUUCAAAAUUAC ------------------------------------..((((((..(((((................)))))(((.((((.(((((....)))))))))..)))......))))))... ( -9.59, z-score = 0.43, R) >consensus ________________________UUUUAUUUUCACUUUUCCUUCUCGCAUGGCUUAGAAUGAGCCAAAUUGCAUUCAGCUGUUUGUUUUUAUGCGCUGUCACGAGAAUUCCAAACUAC ..........................................((((((..((((((.....)))))).........((((.((.((....)).))))))...))))))........... (-14.37 = -14.95 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:00 2011