| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,944,355 – 1,944,451 |
| Length | 96 |
| Max. P | 0.744609 |
| Location | 1,944,355 – 1,944,451 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 76.40 |
| Shannon entropy | 0.40646 |
| G+C content | 0.64941 |
| Mean single sequence MFE | -39.21 |
| Consensus MFE | -27.26 |
| Energy contribution | -27.50 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.744609 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 1944355 96 - 27905053 GCCACCGAGUUGGCUGGCUGGCGGCGUUUUGGCCUUAUUGGAGCUAGAAACUGGAGGGCGGGUAGUGCCGGUGGCUAUGG-UUGCGGCUGUGGCGGU--------- (((((((.((..(((.(((..(.(..(((((((((....)).)))))))..).)..))).)))...))))))))).((.(-(..(....)..)).))--------- ( -37.90, z-score = -0.01, R) >droSim1.chr3R 1971927 96 - 27517382 GCCGCCGAGUUGGCUGGCUGACGGCGUUUUGGCCUUAUUGGGGCUAAAAACUGGAGGGCGGGUGGUGUCGGUGGCUAUGG-UUGCGGCUGUGGCGGC--------- (((((((((..(.(((.((..(((..(((((((((.....))))))))).)))..)).))).)..).)))))))).....-..((.((....)).))--------- ( -42.60, z-score = -2.19, R) >droSec1.super_6 2045606 96 - 4358794 GCCGCCGAGUUGGCUGGCUGACGGCGGUUUGGCCUUAUUGGGGCUAAAAACUGGAGGGCGAGUGGUGCCGGUGGCUAUGG-UUGCGACUGUGGCGGC--------- (((((((((((((((((((..(((((.((((((((.....)))))))).(((.(....).)))..)))))..))))..))-)..))))).)))))))--------- ( -43.50, z-score = -2.35, R) >droYak2.chr3R 17887674 106 - 28832112 GCCGCCGAGUUGGCUGGCUGGCGGCGUUUUGGCCUUAUUGGGACAAAAAACUGGAGAGCGGGUGGAGCCGGUGGCUAUGGCCUAUGGUUGUGGAUGUGGAUGUGGC (((((((..((.(((.(((..(((..(((((.(((....))).)))))..)))...))).))).))..)))))))((..(((...)))..)).............. ( -38.10, z-score = -0.68, R) >droEre2.scaffold_4770 2203125 74 - 17746568 GCCGCCGAGUUGGCUGGCUGGCGGCGCUGUGGCCUUAUUGGGGCAGGAAACUGGGGAGCGGGGGCUGCUGGUGG-------------------------------- ((((((.((((....))))))))))((((..(((((.......(((....))).......)))))..).)))..-------------------------------- ( -33.94, z-score = -1.17, R) >consensus GCCGCCGAGUUGGCUGGCUGGCGGCGUUUUGGCCUUAUUGGGGCUAAAAACUGGAGGGCGGGUGGUGCCGGUGGCUAUGG_UUGCGGCUGUGGCGGC_________ (((((((.((..(((.(((..(((...((((((((.....))))))))..)))...))).)))...)))))))))............................... (-27.26 = -27.50 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:58 2011