| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,942,041 – 1,942,104 |
| Length | 63 |
| Max. P | 0.708174 |
| Location | 1,942,041 – 1,942,104 |
|---|---|
| Length | 63 |
| Sequences | 3 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 82.22 |
| Shannon entropy | 0.23322 |
| G+C content | 0.49030 |
| Mean single sequence MFE | -16.20 |
| Consensus MFE | -9.65 |
| Energy contribution | -10.43 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.708174 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1942041 63 + 27905053 UGGGCACAAAUAAAACUACUCCGAGGACUGCUAGUUCUGCUAGUCCUCCCAGUGCUCCUACUG .((((((...((....))....(((((((((.......)).)))))))...))))))...... ( -19.30, z-score = -2.77, R) >droSec1.super_6 2043344 54 + 4358794 UGGGCACAAAUAAAACUACUCCGAGGACUGCUAGUCCUCCUAGUGCUACUACUU--------- ..(((((...((....))....((((((.....))))))...))))).......--------- ( -13.80, z-score = -1.91, R) >droSim1.chr3R 1969637 54 + 27517382 UGGGCACAAAUAAAACUACUCCGAGGACUGCUAGUCCUCCUAGUGCUCCUACUG--------- .((((((...((....))....((((((.....))))))...))))))......--------- ( -15.50, z-score = -2.57, R) >consensus UGGGCACAAAUAAAACUACUCCGAGGACUGCUAGUCCUCCUAGUGCUCCUACUG_________ .((((((...((....))....((((((.....))))))...))))))............... ( -9.65 = -10.43 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:57 2011