Locus 8826

Sequence ID dm3.chr3R
Location 1,924,570 – 1,924,663
Length 93
Max. P 0.832460
window12117

overview

Window 7

Location 1,924,570 – 1,924,663
Length 93
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 77.81
Shannon entropy 0.28870
G+C content 0.39879
Mean single sequence MFE -24.70
Consensus MFE -19.39
Energy contribution -19.73
Covariance contribution 0.34
Combinations/Pair 1.12
Mean z-score -1.65
Structure conservation index 0.79
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.84
SVM RNA-class probability 0.832460
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 1924570 93 + 27905053
---------------------------AUGUUAUAUUUUACAACAGUGUGGCAGGGAGUCGACGUAGUGACGAAGCACAGCUUACGAAACCUUGUAAGCGCGAUCAAUAUAAGUCAAAUU
---------------------------.(((((((((.......))))))))).......(((...(((......))).((((((((....)))))))).............)))..... ( -20.70, z-score =  -0.65, R)
>droSim1.chr3R 1951652 120 + 27517382
AGCAUGGACUAGGGAAUUCAAUACCAGAUGUUAUAUUUUACAUCAGUGUGGCAGGGAGUCGACGUAGUGACGAAGCACAGUUUACAAAGCCUUGUAAGCACGAUCAAUAAAAGUCAAAUU
......((((.((..........)).(((((........))))).((((.((((((.((.(((...(((......))).))).))....))))))..))))..........))))..... ( -26.40, z-score =  -1.06, R)
>droSec1.super_6 2025959 98 + 4358794
----------------------AACAGAUGUUAUAUUUUACAUCAGUGUGGCAGGGAGUCGAAGUAGUGACGUAGCACAGUUUACGAAGCCUUGUAGACACGAUCAAUAUAAGUCAAAUU
----------------------....(((((........))))).((((.((((((..((((((..(((......)))..))).)))..))))))..))))(((........)))..... ( -27.00, z-score =  -3.25, R)
>consensus
______________________A_CAGAUGUUAUAUUUUACAUCAGUGUGGCAGGGAGUCGACGUAGUGACGAAGCACAGUUUACGAAGCCUUGUAAGCACGAUCAAUAUAAGUCAAAUU
..........................(((((........))))).((((.((((((..(((..(..(((......)))..)...)))..))))))..))))(((........)))..... (-19.39 = -19.73 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:55 2011