Locus 8824

Sequence ID	dm3.chr3R
Location	1,897,035 – 1,897,142
Length	107
Max. P	0.522091

overview

Window 4

Location	1,897,035 – 1,897,142
Length	107
Sequences	12
Columns	120
Reading direction	forward
Mean pairwise identity	91.31
Shannon entropy	0.17740
G+C content	0.37249
Mean single sequence MFE	-25.62
Consensus MFE	-25.22
Energy contribution	-25.22
Covariance contribution	0.01
Combinations/Pair	1.03
Mean z-score	-0.63
Structure conservation index	0.98
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.06
SVM RNA-class probability	0.522091
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 1897035 107 + 27905053
UUUGGGAAAUUGCUCAUGAAUGAUUUGUUGGCAUAAAUCAAUUUGAUUGAUGAGCGUCAAUAUACUUAUAUGCCGCUUUGAUGUGGGCAAUUCCAAUACAGCAAGCC-------------
....((((.((((((((...((((((((....))))))))...........(((((.(((((....))).)).)))))....)))))))))))).............------------- ( -25.50, z-score =  -0.44, R)
>droAna3.scaffold_13340 5461418 107 - 23697760
UUUGGGAAAUUGCUCAUGAAUGAUUUGUUGGCAUAAAUCAAUUUGAUUGAUGAGCGUCAAUAUACUUAUACGCCGCUUUGAUGUGGGCAAUUCCAAUACAGUGCACC-------------
.((((((....((((((.(((.(...(((((......))))).).))).))))))................(((((......)).)))..))))))...........------------- ( -24.30, z-score =  -0.22, R)
>droEre2.scaffold_4770 2155849 107 + 17746568
UUUGGGAAAUUGCUCAUGAAUGAUUUGUUGGCAUAAAUCAAUUUGAUUGAUGAGCGUCAAUAUACUUAUAUGCCGCUUUGAUGUGGGCGAUUCCAAUACAGCGAGCC-------------
....((((.((((((((...((((((((....))))))))...........(((((.(((((....))).)).)))))....)))))))))))).............------------- ( -25.20, z-score =  -0.24, R)
>droYak2.chr3R 17840723 107 + 28832112
UUUGGGAAAUUGCUCAUGAAUGAUUUGUUGGCAUAAAUCAAUUUGAUUGAUGAGCGUCAAUAUACUUAUAUGCCGCUUUGAUGUGGGCAAUUCCAAUACAGCGAGCC-------------
....((((.((((((((...((((((((....))))))))...........(((((.(((((....))).)).)))))....)))))))))))).............------------- ( -25.50, z-score =  -0.41, R)
>droSec1.super_6 1998371 107 + 4358794
UUUGGGAAAUUGCUCAUGAAUGAUUUGUUGGCAUAAAUCAAUUUGAUUGAUGAGCGUCAAUAUACUUAUAUGCCGCUUUGAUGUGGGCAAUUCCAAUACAACGAGCC-------------
....((((.((((((((...((((((((....))))))))...........(((((.(((((....))).)).)))))....)))))))))))).............------------- ( -25.50, z-score =  -0.82, R)
>droSim1.chr3R 1924066 107 + 27517382
UUUGGGAAAUUGCUCAUGAAUGAUUUGUUGGCAUAAAUCAAUUUGAUUGAUGAGCGUCAAUAUACUUAUAUGCCGCUUUGAUGUGGGCAAUUCCAAUACAACGAGCC-------------
....((((.((((((((...((((((((....))))))))...........(((((.(((((....))).)).)))))....)))))))))))).............------------- ( -25.50, z-score =  -0.82, R)
>droWil1.scaffold_181130 5253407 106 - 16660200
UUUGGGAAAUUGCUCAUGAAUGAUUUGUUGGCAUAAAUCAAUUUGAUUGAUGAGCGUCAAUAUACUUAUAUGCCGCUUUGAUGUGGGCAAUUCCAAUGCAGAGUUC--------------
....((((.((((((((...((((((((....))))))))...........(((((.(((((....))).)).)))))....))))))))))))............-------------- ( -25.50, z-score =  -0.46, R)
>dp4.chr2 14889007 120 - 30794189
UUUGGGAAAUUGCUCAUGAAUGAUUUGUUGGCAUAAAUCAAUUUGAUUGAUGAGCGUCAAUAUACUUAUAUGCCGCUUUGAUGUGGGCAAUUCCAAUACAGCAUCCAAACAGACAUAUCC
....((((.((((((((...((((((((....))))))))...........(((((.(((((....))).)).)))))....)))))))))))).......................... ( -25.50, z-score =   0.19, R)
>droPer1.super_0 4507196 120 + 11822988
UUUGGGAAAUUGCUCAUGAAUGAUUUGUUGGCAUAAAUCAAUUUGAUUGAUGAGCGUCAAUAUACUUAUAUGCCGCUUUGAUGUGGGCAAUUCCAAUACAGCAUCCAAACAGACAUAUCC
....((((.((((((((...((((((((....))))))))...........(((((.(((((....))).)).)))))....)))))))))))).......................... ( -25.50, z-score =   0.19, R)
>droVir3.scaffold_12822 2087075 102 - 4096053
UUUGGGAAAUUGCUCAUGAAUGAUUUGUUGGCAUAAAUCAAUUUGAUUGAUGAGCGUCAAUAUACUUAUAUGCCGCUUUGAUGUGGGCAAUUCCAG-AAAUCG-----------------
(((((((..((((((((...((((((((....))))))))...........(((((.(((((....))).)).)))))....))))))))))))))-).....----------------- ( -26.50, z-score =  -1.51, R)
>droMoj3.scaffold_6540 11166770 102 + 34148556
UUUGGGAAAUUGCUCAUGAAUGAUUUGUUGGCAUAAAUCAAUUUGAUUGAUGAGCGUCAAUAUACUUAUAUGCCGCUUUGAUGUGGGCAAUUCCAG-AAAUCG-----------------
(((((((..((((((((...((((((((....))))))))...........(((((.(((((....))).)).)))))....))))))))))))))-).....----------------- ( -26.50, z-score =  -1.51, R)
>droGri2.scaffold_14624 1257795 102 - 4233967
UUUGGGAAAUUGCUCAUGAAUGAUUUGUUGGCAUAAAUCAAUUUGAUUGAUGAGCGUCAAUAUACUUAUAUGCCGCUUUGAUGUGGGCAAUUCCAG-AAAUCG-----------------
(((((((..((((((((...((((((((....))))))))...........(((((.(((((....))).)).)))))....))))))))))))))-).....----------------- ( -26.50, z-score =  -1.51, R)
>consensus
UUUGGGAAAUUGCUCAUGAAUGAUUUGUUGGCAUAAAUCAAUUUGAUUGAUGAGCGUCAAUAUACUUAUAUGCCGCUUUGAUGUGGGCAAUUCCAAUACAGCGAGCC_____________
....((((.((((((((...((((((((....))))))))...........(((((.(((((....))).)).)))))....)))))))))))).......................... (-25.22 = -25.22 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:52 2011