| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,872,910 – 1,873,029 |
| Length | 119 |
| Max. P | 0.660222 |
| Location | 1,872,910 – 1,873,029 |
|---|---|
| Length | 119 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.64 |
| Shannon entropy | 0.09502 |
| G+C content | 0.33309 |
| Mean single sequence MFE | -26.79 |
| Consensus MFE | -20.30 |
| Energy contribution | -19.72 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.660222 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1872910 119 + 27905053 GUGUACUUAAAAGUACAGCCAG-CUACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCCAAAAUGCUAACAGCAAAUGACAAAUAUUCUUGUUAAGAGGCAUAAAUGCAGCA .((((((....))))))....(-((..(((((...(((((.......))))))))))((((((((((....(((.....)))..((((((......))))))...))).)))))))))). ( -29.30, z-score = -3.34, R) >droSim1.chr3R 1899540 119 + 27517382 GUGUACUUAAAAGUACAGCCAG-CUACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCCAAAAUGCUAACAGCAAAUGACAAAUAUUCUUGUUAAGAGGCAUAAAUGUAGCU .((((((....))))))...((-(((((...(((((...((................((..(((((......)))))..))...((((((......)))))).)).)))))..))))))) ( -27.00, z-score = -2.67, R) >droSec1.super_6 1974023 119 + 4358794 GUGUACUUAAAAGUACAGCCAG-CUACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCCAAAAUGCUAACAGCAAAUGACAAAUAUUCUUGUUAAGAGGCAUAAAUGUAGCU .((((((....))))))...((-(((((...(((((...((................((..(((((......)))))..))...((((((......)))))).)).)))))..))))))) ( -27.00, z-score = -2.67, R) >droYak2.chr3R 17816689 119 + 28832112 GUGUACUUAAAAGUACAGCCAG-CUACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCCAAAAUGCUAACAGCAAAUGACAAAUAUUCUUGUUAAGAGGCAUAAAUGCAGAA .((((((....)))))).....-....(((((...(((((.......))))))))))((((((((((....(((.....)))..((((((......))))))...))).))))))).... ( -26.00, z-score = -2.46, R) >droEre2.scaffold_4770 2129809 119 + 17746568 GUGUACUUAAAAGUACAGCCAG-CUACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCCAAAAUGCUAACAGCAAAUGACAAAUAUUCUUGUUAAGAGGCAUAAAUGCAGAA .((((((....)))))).....-....(((((...(((((.......))))))))))((((((((((....(((.....)))..((((((......))))))...))).))))))).... ( -26.00, z-score = -2.46, R) >droAna3.scaffold_13340 5440640 119 - 23697760 GUGUACUUAAAAGUACAGCUAG-CUACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCCAAAAUGCUAACAGCAAAUGACAAAUAUUCUUGUUAAGAGGCAUAAAUGCAGCA .((((((....))))))....(-((..(((((...(((((.......))))))))))((((((((((....(((.....)))..((((((......))))))...))).)))))))))). ( -29.30, z-score = -3.14, R) >dp4.chr2 14868443 119 - 30794189 GUGUACUUAAAAGUACAGCCAG-CUACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCCAAAAUGCUAACAGCAAAUGACAAAUAUUCUUGUUAAGAGGCAUAAAUGCAGUC .((((((....))))))....(-((..(((((...(((((.......))))))))))((((((((((....(((.....)))..((((((......))))))...))).)))))))))). ( -26.40, z-score = -2.63, R) >droPer1.super_0 4486572 119 + 11822988 GUGUACUUAAAAGUACAGCCAG-CUACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCCAAAAUGCUAACAGCAAAUGACAAAUAUUCUUGUUAAGAGGCAUAAAUGCAGUC .((((((....))))))....(-((..(((((...(((((.......))))))))))((((((((((....(((.....)))..((((((......))))))...))).)))))))))). ( -26.40, z-score = -2.63, R) >droWil1.scaffold_181130 5229286 120 - 16660200 GUGUACUUAAAAGUACAGGCAGGCUACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCUAAAAUGCUAACAGCAAAUGACAAAUAUUCUUGUUAAGAGGCAUAAAUGUGGCA .((((((....)))))).....((((((...(((((...((................((..(((((......)))))..))...((((((......)))))).)).)))))..)))))). ( -27.70, z-score = -1.96, R) >droVir3.scaffold_12822 2056966 120 - 4096053 GUGUAUUUAAAAGUGAAGGCAGCCAACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCCAAAAUGCUAGCACUAAAUGACAAAUAUUCUUGUUAAGAGGCAUAAAUGCAGCA .((((((((.((((((((.......(((.....))).......))))))))......((((((.....))))))..((.((...((((((......))))))..)))).))))))))... ( -23.84, z-score = -0.76, R) >droMoj3.scaffold_6540 11144652 120 + 34148556 GUGUACUUAAAAGUGAAGGCAGGCAACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCCAAAAUGCUAACAGCAAAUGACAAAUAUUCUUGUUAAGAGGCAUAAAUGCAGCA .(((......((((((((....(((........))).......))))))))......((((((((((....(((.....)))..((((((......))))))...))).))))))).))) ( -27.20, z-score = -1.71, R) >droGri2.scaffold_14624 1234295 120 - 4233967 GUGUACUUAAAAGUGAAGGCAGGCAACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCCAAAAUGCUAACAGUAAAUGACAAAUAUUCUUGUUAAGCGGCAUAAAUGCAGCA .(((......((((((((....(((........))).......))))))))......((((((((((....(((.....)))..((((((......))))))...))).))))))).))) ( -25.30, z-score = -1.03, R) >consensus GUGUACUUAAAAGUACAGCCAG_CUACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCCAAAAUGCUAACAGCAAAUGACAAAUAUUCUUGUUAAGAGGCAUAAAUGCAGCA ...((((....))))............(((((...(((((.......))))))))))((((((((((....(((.....)))..((((((......))))))...))).))))))).... (-20.30 = -19.72 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:49 2011