| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,872,673 – 1,872,779 |
| Length | 106 |
| Max. P | 0.778916 |
| Location | 1,872,673 – 1,872,779 |
|---|---|
| Length | 106 |
| Sequences | 8 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 88.37 |
| Shannon entropy | 0.22759 |
| G+C content | 0.46486 |
| Mean single sequence MFE | -30.76 |
| Consensus MFE | -19.23 |
| Energy contribution | -19.28 |
| Covariance contribution | 0.05 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.778916 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1872673 106 - 27905053 UCACCAUCGCCUCUCCUCUCCCCGAAGGCGUGUGUUUGCAGCUGCUGCGGAAAAUAACUUUUUAAUGAGAUAAACUCGUUGAUUUCUAGAUUCUGUGCGCUGUGGU .(((...(((((.((........))))))).))).(..((((.((.((((((..((.....((((((((.....))))))))....))..))))))))))))..). ( -31.90, z-score = -2.79, R) >droSim1.chr3R 1899310 106 - 27517382 UCACCAUCGCCUCUCCUCUCCCCGAAGGCGUGUGUUUGCAGCUGCUGCGGAAAAUAACUUUUUAAUGAGAUAAACUCGUUGAUUUCUAGAUUCUGUGCGCUGUGGU .(((...(((((.((........))))))).))).(..((((.((.((((((..((.....((((((((.....))))))))....))..))))))))))))..). ( -31.90, z-score = -2.79, R) >droSec1.super_6 1973799 106 - 4358794 UCACCAUCGCCUCUCCUCUCCCCGAAGGCGUGUGUUUGCAGCUGCUGCGGAAAAUAACUUUUUAAUGAGAUAAACUCGUUGAUUUCUAGAUUCUGUGCGCUGUGGU .(((...(((((.((........))))))).))).(..((((.((.((((((..((.....((((((((.....))))))))....))..))))))))))))..). ( -31.90, z-score = -2.79, R) >droYak2.chr3R 17816476 102 - 28832112 ----CAUCGCCUUUCCUCUUCCCGAAGGCGUGUGUUUGCAGCUGCUGCGGAAAAUAACUUUUUAAUGAGAUAAACUCGUUGAUUUCUAGAUUUUGUGCGCUGCGGU ----((((((((((.........))))))).))).(((((((....(((.(((((......((((((((.....)))))))).......))))).)))))))))). ( -30.62, z-score = -2.24, R) >droEre2.scaffold_4770 2129590 106 - 17746568 UCACCAUCGCCUUUUCCCUUCCCGAAGGCGUGUGUUUGCAGCUGCUGCGGAAAAUAACUUUUUAAUGAGAUAAACUCGUUGAUUUCUAGAUUCUGUGCGCUGUGGU .(((...(((((((.........))))))).))).(..((((.((.((((((..((.....((((((((.....))))))))....))..))))))))))))..). ( -33.00, z-score = -3.15, R) >droAna3.scaffold_13340 5440434 95 + 23697760 --------GCCAUCCCCCUUCCGG---GCGUGUGUUUGCAGCUGCUGCGGAAAAUAACUUUUUAAUGAGAUAAACUCGUUGAUUUCUAGAUUCUGAGCGCUGUGGU --------(((((.(((.....))---).))).))(..((((.(((.(((((..((.....((((((((.....))))))))....))..))))))))))))..). ( -29.40, z-score = -2.32, R) >dp4.chr2 14868235 100 + 30794189 ---CCAUCGCCUCGCUCCCGUUCG---GUGUAUGUUUGCAGCUGCUGCGGAAAAUAACUUUUUAAUGAGAUAAACUCGUUGAUUUCUAGAUUCUCGGCGCUGUGGU ---.(((((((..((....))..)---))).))).(..((((.((((.((((..((.....((((((((.....))))))))....))..))))))))))))..). ( -28.70, z-score = -1.70, R) >droPer1.super_0 4486364 103 - 11822988 UUUCCAUCGCCUCGCUCCCGUUCG---GUGUAUGUUUGCAGCUGCUGCGGAAAAUAACUUUUUAAUGAGAUAAACUCGUUGAUUUCUAGAUUCUCGGCGCUGUGGU ....(((((((..((....))..)---))).))).(..((((.((((.((((..((.....((((((((.....))))))))....))..))))))))))))..). ( -28.70, z-score = -1.63, R) >consensus UCACCAUCGCCUCUCCCCUCCCCGAAGGCGUGUGUUUGCAGCUGCUGCGGAAAAUAACUUUUUAAUGAGAUAAACUCGUUGAUUUCUAGAUUCUGUGCGCUGUGGU ....((((((.................))).))).(..((((.((...((((..((.....((((((((.....))))))))....))..))))..))))))..). (-19.23 = -19.28 + 0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:48 2011