| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,412,711 – 6,412,816 |
| Length | 105 |
| Max. P | 0.865968 |
| Location | 6,412,711 – 6,412,816 |
|---|---|
| Length | 105 |
| Sequences | 8 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 71.58 |
| Shannon entropy | 0.56878 |
| G+C content | 0.65405 |
| Mean single sequence MFE | -23.17 |
| Consensus MFE | -12.50 |
| Energy contribution | -12.58 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.865968 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6412711 105 + 23011544 AUGCCUUGGCAGCUGUGCCACAGCUGCCGCCGCACCAGCCCACUCCGCCUGCACCUCAACGUCCGACUCCACCACCCACUCGACUUCCUCGACGUCGUCUUCACU .(((..(((((((((.....)))))))))..)))..............................................((((.((...)).))))........ ( -23.40, z-score = -1.02, R) >droSim1.chr2L 6217101 105 + 22036055 AUGCCUUGGCAGCUGUGCCACAGCUGCCGCCGCACCCGCCCACUCCGCCUGCACCUCAACGUCCGACUCCACCACCCACUCGACUUCCUCGACCUCGUCUUCACU .(((..(((((((((.....)))))))))..))).............................................((((.....))))............. ( -22.00, z-score = -1.41, R) >droSec1.super_5 4480359 105 + 5866729 AUGCCUUGGCAGCUGUGCCACAGCUGCCGCCGCACCCCCCCACUCCGCCUGCACCUCAACGUCCGACUCCACCACCCACUCGACUUCCUCGACGUCGUCUUCACU .(((..(((((((((.....)))))))))..)))..............................................((((.((...)).))))........ ( -23.40, z-score = -1.99, R) >droYak2.chr2L 15837307 105 - 22324452 AUGCCUUGGCAGCUGUGCCCCAGCUGCCGCCGCACCCGCCCACUCUGCCUGCACCUCAACGUCCGACUCCACCACCCACUCGACAUCCUCGACGUCGUCUUCGCU .(((..(((((((((.....)))))))))..)))................((....(.(((((.((......................))))))).).....)). ( -23.55, z-score = -0.81, R) >droEre2.scaffold_4929 15338929 105 + 26641161 AUGCCUUGGCAGCUGUGCCACAGCUGCCGCCGCACCCGCCCACUCCGCCUGCACCUCAACAUCCGACUCCACCACCCACUCGACGUCCUCGACGUCGUCUUCCCU .(((..(((((((((.....)))))))))..)))..............................................(((((((...)))))))........ ( -29.10, z-score = -3.34, R) >dp4.chr4_group5 520849 99 - 2436548 AUGUCUUGGCAGCUGCGUCACAGCCGCCGCUGCCACCACCAGCUCCAGCACA---UCCACAGCAUCGUCUUCCUCCUCCACGGCCUCGUCGUCCUCUUGUGC--- ..((..(((((((.(((.......))).)))))))..))........(((((---......((..((....((........))...))..)).....)))))--- ( -25.60, z-score = -1.30, R) >droPer1.super_5 492489 99 - 6813705 AUGUCUUGGCAGCUGCGUCACAGCCGCCGCUGCCACCACCAGCUCCAGCACA---UCCACAGCAUCGUCUUCCUCCUCCACGGCCUCGUCGUCCUCCUGUGC--- ..((..(((((((.(((.......))).)))))))..))........(((((---......((..((....((........))...))..)).....)))))--- ( -24.90, z-score = -1.03, R) >droVir3.scaffold_12963 17545259 81 - 20206255 AUGCCUCAGCAGCUGCGUUGCCGCCACCGCCACCGCCACGAGCUCAGCCACAAACUCGACAGCCUCGUCGUCUUCCUCCUC------------------------ ........((((((.(((.((.((....))....)).)))))))..))........((((......))))...........------------------------ ( -13.40, z-score = 1.04, R) >consensus AUGCCUUGGCAGCUGUGCCACAGCUGCCGCCGCACCCGCCCACUCCGCCUGCACCUCAACAUCCGACUCCACCACCCACUCGACUUCCUCGACGUCGUCUUC_CU ..((..((((.((((.....)))).))))..))..............................................((((.....))))............. (-12.50 = -12.58 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:16 2011