| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,871,465 – 1,871,569 |
| Length | 104 |
| Max. P | 0.573027 |
| Location | 1,871,465 – 1,871,569 |
|---|---|
| Length | 104 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.37 |
| Shannon entropy | 0.20099 |
| G+C content | 0.31064 |
| Mean single sequence MFE | -21.13 |
| Consensus MFE | -17.57 |
| Energy contribution | -17.57 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.573027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1871465 104 - 27905053 UUUUAAUAAGUUGCGACGAGCUGACGACAAAAAAGUUAUCAUUUAUUAAAAUUGUUGUCUUUCCAACGUAAUUAUAAUAGUUUGAUAAAACAUCCUGCGCGACA---------------- .........((((((..((..(((..((......))..)))(((((((((.(((((((..((.......))..))))))))))))))))...))...)))))).---------------- ( -19.50, z-score = -1.35, R) >droSim1.chr3R 1898038 104 - 27517382 UUUUAAUAAGUUGCGACGAGCUGACGACAAAAAAGUUAUCAUUUAUUAAAAUUUUUGUCUUUCCAACGUAAUUAUAAUAGUUUGAUAAAACAUCCUGCGCGACA---------------- .........(((((((((....((.((((((((..(((........)))..)))))))).))....)))..........((((....))))......)))))).---------------- ( -19.90, z-score = -1.60, R) >droSec1.super_6 1972537 104 - 4358794 UUUUAAUAAGUUGCGACGAGCUGACGACAAAAAAGUUAUCAUUUAUUAAAAUUUUUGUCUUUCCAACGUAAUUAUAAUAGUUUGAUAAAACAUCCUGCGCGACA---------------- .........(((((((((....((.((((((((..(((........)))..)))))))).))....)))..........((((....))))......)))))).---------------- ( -19.90, z-score = -1.60, R) >droYak2.chr3R 17815056 104 - 28832112 UUUUAAUAAGUUGCGACGGACUGGCGACAAAAAAGUUAACAUUUAUUAAAAUUUUUGUCUUUCCAACGUAAUUAUAAUAGUUUGAUAAAACAUCCUGCGCGAUA---------------- .........((((((..(((.(((.((((((((..((((......))))..))))))))...)))..............((((....)))).)))..)))))).---------------- ( -22.70, z-score = -2.31, R) >droEre2.scaffold_4770 2128320 104 - 17746568 UUUUAAUAAGUUGCGACGGGCUGACGACAAAAAAGUUAUCAUUUAUUAAAAUUUUUGUCUUUCCAACGUAAUUAUAAUAGUUUGAUAAAACAUCCUGCGCGACA---------------- .........((((((.((((.((..((((((((..(((........)))..))))))))..((.(((............))).)).....)).)))))))))).---------------- ( -25.20, z-score = -3.26, R) >droAna3.scaffold_13340 5439325 104 + 23697760 UUUUAAUAAGUUGCGACGAGCUGACGACAAAAAAGUUAUCAUUUAUUAAAAUUUUUGUCUUUCCAACGUAAUUAUAAUAGUUUGAUAAAACAUCCUGCGCGACA---------------- .........(((((((((....((.((((((((..(((........)))..)))))))).))....)))..........((((....))))......)))))).---------------- ( -19.90, z-score = -1.60, R) >dp4.chr2 14866700 111 + 30794189 UUUUAAUAAGUUACGACGAGCUGACGACAAAAAAGUUAUCAUUUAUUAAAAUUUUUGUCUUUCCAACGUAAUUAUAAUAGUUUGAUAAAACAUCCUGCGCGACAAGCAAUC--------- ........(((((((..(.(..((.((((((((..(((........)))..)))))))))).))..)))))))......((((....))))....(((.......)))...--------- ( -16.10, z-score = -0.30, R) >droPer1.super_0 4484804 111 - 11822988 UUUUAAUAAGUUACGACGAGCUGACGACAAAAAAGUUAUCAUUUAUUAAAAUUUUUGUCUUUCCAACGUAAUUAUAAUAGUUUGAUAAAACAUCCUGCGCGACAAGCAAUC--------- ........(((((((..(.(..((.((((((((..(((........)))..)))))))))).))..)))))))......((((....))))....(((.......)))...--------- ( -16.10, z-score = -0.30, R) >droWil1.scaffold_181130 5225898 120 + 16660200 UUUUAAUAAGUUGCGACGAGCUGACGACAAAAAAGUUAUCAUUUAUUAAAAUUUUUGUCUUUCCAACGUAAUUAUAAUAGUUUGAUAAAACAUCCUGUGCGACAAGUGAGAGAUCCAACC (((((....(((((.(((....((.((((((((..(((........)))..)))))))).))....))).......((((..((......))..)))))))))...)))))......... ( -19.50, z-score = -0.67, R) >droVir3.scaffold_12822 2055370 115 + 4096053 UUUUAAUAAGUUGUGACGCGCUGACGACAAAAAAGUUAUCAUUUAUUAAAAUUUUUGUCUUUCCAACGUAAUUAUAAUAGUUUGGUAAAACAUCGUGCGCGACAAGCAGCCACUC----- .........(((((..((((((((.((((((((..(((........)))..))))))))....................((((....)))).))).)))))....))))).....----- ( -25.20, z-score = -1.75, R) >droMoj3.scaffold_6540 11142641 115 - 34148556 UUUUAAUAAGUUGUGACGCGCUGACGACAAAAAAGUUAUCAUUUAUUAAAAUUUUUGUCUUUCCAACGUAAUUAUAAUAGUUUGGUAAAACAUCGUGCGCGACAAGCAGCGACUG----- .........(((((..((((((((.((((((((..(((........)))..))))))))....................((((....)))).))).)))))....))))).....----- ( -26.10, z-score = -1.48, R) >droGri2.scaffold_14624 1232405 115 + 4233967 UUUUAAUAAGUUGUGACGCGCUGACGACAAAAAAGUUAUCAUUUAUUAAAAAUUUUGUCUUUCCAACGUAAUUAUAAUAGUUUGGUAAAACAUCGUGCGCGAAAAGCAGCCGUUC----- .........(((((..((((((((.(((((((...(((........)))...)))))))....................((((....)))).))).)))))....))))).....----- ( -23.50, z-score = -1.07, R) >consensus UUUUAAUAAGUUGCGACGAGCUGACGACAAAAAAGUUAUCAUUUAUUAAAAUUUUUGUCUUUCCAACGUAAUUAUAAUAGUUUGAUAAAACAUCCUGCGCGACA________________ .........(((((((((....((.((((((((..(((........)))..)))))))).))....)))..........((((....))))......))))))................. (-17.57 = -17.57 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:47 2011