| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,815,262 – 1,815,352 |
| Length | 90 |
| Max. P | 0.975326 |
| Location | 1,815,262 – 1,815,352 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 91.41 |
| Shannon entropy | 0.13985 |
| G+C content | 0.43839 |
| Mean single sequence MFE | -24.26 |
| Consensus MFE | -20.94 |
| Energy contribution | -20.86 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.975326 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1815262 90 + 27905053 CUGCCAAUAAUAAUAAUAAUCAUAACGGCAAA------------GGCAUCGACAUCGGUAACGGCAUUUUCAUCGGCAACUUCACGCCGAAAGUGCCAAAAA .((((.....................))))..------------(..((((....))))..)(((((((...(((((........))))))))))))..... ( -23.90, z-score = -3.37, R) >droEre2.scaffold_4770 2080273 102 + 17746568 CUGCCAAUAAUAAUAAUAAUCAUAACGGCAAAGGCAAAGGCAUCGACAUCGGCAUCGGCAUCGGCAUUUUCAUCGGCAACUUCACGCCGAAAGUGCCAAAAA .((((......................((....))...((..(((....)))..))))))..(((((((...(((((........))))))))))))..... ( -25.70, z-score = -2.21, R) >droYak2.chr3R 17760975 96 + 28832112 CUGCCAAUAAUAAUAAUAAUCAUAACGGCAAA------GGCAUCGACAUUGGCAUCGGCAUCGGCAUUUUCAUCGGCAACUUCACGCCGAAAGUGCCAAAAA .(((((((............(.....)((...------.))......)))))))........(((((((...(((((........))))))))))))..... ( -24.10, z-score = -2.08, R) >droSec1.super_6 1924703 96 + 4358794 CUGCCAAUAAUAAUAAUAAUCAUAACGGCAAA------GGCAUCGACAUCGGCAUCGGCAUCGGCAUUUUCAUCGGCAACUUCACGCCGAAAGUGCCAAAAA .((((......................((...------.)).(((....)))....))))..(((((((...(((((........))))))))))))..... ( -24.90, z-score = -2.54, R) >droSim1.chr3R 1851998 90 + 27517382 CUGCCAAUAAUAAUAAUAAUCAUAACGGCAAA------------GGCAUCGACAUCGGCAUCGGCAUUUUCAUCGGCAACUUCACGCCGAAAGUGCCAAAAA .((((......................((...------------.))...(....)))))..(((((((...(((((........))))))))))))..... ( -22.70, z-score = -2.77, R) >consensus CUGCCAAUAAUAAUAAUAAUCAUAACGGCAAA______GGCAUCGACAUCGGCAUCGGCAUCGGCAUUUUCAUCGGCAACUUCACGCCGAAAGUGCCAAAAA .((((.....................))))..............((..(((....)))..))(((((((...(((((........))))))))))))..... (-20.94 = -20.86 + -0.08)
| Location | 1,815,262 – 1,815,352 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 91.41 |
| Shannon entropy | 0.13985 |
| G+C content | 0.43839 |
| Mean single sequence MFE | -26.50 |
| Consensus MFE | -23.48 |
| Energy contribution | -23.08 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.784832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1815262 90 - 27905053 UUUUUGGCACUUUCGGCGUGAAGUUGCCGAUGAAAAUGCCGUUACCGAUGUCGAUGCC------------UUUGCCGUUAUGAUUAUUAUUAUUAUUGGCAG .....((((...((((((......))))))...............((....)).))))------------..(((((..(((((....)))))...))))). ( -23.00, z-score = -1.24, R) >droEre2.scaffold_4770 2080273 102 - 17746568 UUUUUGGCACUUUCGGCGUGAAGUUGCCGAUGAAAAUGCCGAUGCCGAUGCCGAUGUCGAUGCCUUUGCCUUUGCCGUUAUGAUUAUUAUUAUUAUUGGCAG ...((((((...((((((......))))))......))))))((((((((..((((.(((.((....))..))).))))(((((....))))))))))))). ( -28.50, z-score = -1.61, R) >droYak2.chr3R 17760975 96 - 28832112 UUUUUGGCACUUUCGGCGUGAAGUUGCCGAUGAAAAUGCCGAUGCCGAUGCCAAUGUCGAUGCC------UUUGCCGUUAUGAUUAUUAUUAUUAUUGGCAG ...((((((...((((((......))))))......))))))((((((((..((((.(((....------.))).))))(((((....))))))))))))). ( -27.10, z-score = -1.57, R) >droSec1.super_6 1924703 96 - 4358794 UUUUUGGCACUUUCGGCGUGAAGUUGCCGAUGAAAAUGCCGAUGCCGAUGCCGAUGUCGAUGCC------UUUGCCGUUAUGAUUAUUAUUAUUAUUGGCAG .....((((...((((((......)))))).........((((..((....))..)))).))))------..(((((..(((((....)))))...))))). ( -28.30, z-score = -1.89, R) >droSim1.chr3R 1851998 90 - 27517382 UUUUUGGCACUUUCGGCGUGAAGUUGCCGAUGAAAAUGCCGAUGCCGAUGUCGAUGCC------------UUUGCCGUUAUGAUUAUUAUUAUUAUUGGCAG .....((((...((((((......)))))).........((((......)))).))))------------..(((((..(((((....)))))...))))). ( -25.60, z-score = -1.78, R) >consensus UUUUUGGCACUUUCGGCGUGAAGUUGCCGAUGAAAAUGCCGAUGCCGAUGCCGAUGUCGAUGCC______UUUGCCGUUAUGAUUAUUAUUAUUAUUGGCAG ...((((((...((((((......)))))).........((....)).))))))..................(((((..(((((....)))))...))))). (-23.48 = -23.08 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:39 2011