| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,790,132 – 1,790,240 |
| Length | 108 |
| Max. P | 0.651346 |
| Location | 1,790,132 – 1,790,240 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 75.73 |
| Shannon entropy | 0.39054 |
| G+C content | 0.37072 |
| Mean single sequence MFE | -24.03 |
| Consensus MFE | -13.57 |
| Energy contribution | -17.07 |
| Covariance contribution | 3.50 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.651346 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1790132 108 + 27905053 AAGCUGACUUAUUAUCAGAUUCUAAAGAAUUCGCUCUUUUCUGUAUUUGUUAUGGAAUGUGUGCCAGUAUCUCGCAGUUAAUUCUAUACAUUUCAUAU-CAGCACACUU--------- ..(((((........((((....(((((......))))))))).......((((((((((((((.((...)).))((......)))))))))))))))-))))......--------- ( -22.90, z-score = -1.90, R) >droYak2.chr3R 17735733 103 + 28832112 ---------AAC--UCAGAUCUUGAAGAAUUCGCGCUUUUCUGUGUUUUAUGUGGC-UGUGUGCCAGUAUCUCGCACUUAUUCGCAUACAUUUCUUGUGCAGCAUUCUUUUGUCC--- ---------...--...(((...(((((((.(((((......((((...(((((..-((.((((.((...)).)))).))..))))))))).....)))).).))))))).))).--- ( -23.90, z-score = -1.35, R) >droSec1.super_6 1899848 110 + 4358794 GAGCUGUCUUAU---CAGAUACUAAAGAAUUCGCGCUAUUCUGUAUUUGUUGUGGAAUGUGUGUCAGUAUCUCGCAGAUAUUUCCAUACUUUUCUUAU-CAGCAUACUUUCUCA---- ..((((......---(((((((...(((((.......))))))))))))....((((.(((((..((((((.....))))))..))))).))))....-))))...........---- ( -25.10, z-score = -1.80, R) >droSim1.chr3R 1825383 114 + 27517382 GAGCUGUCUUAU---CAGAUACUAAAGAAUUCGCGCUAUUCUGUAUUUGUUGUGGAAUGUGUGUCAGUAUCUCGCAGAUAUUUCCAUACUUUUCUUAU-CAGCCUACUUCUUUUCUCA ..((((......---(((((((...(((((.......))))))))))))....((((.(((((..((((((.....))))))..))))).))))....-))))............... ( -24.20, z-score = -1.73, R) >consensus GAGCUGUCUUAU___CAGAUACUAAAGAAUUCGCGCUAUUCUGUAUUUGUUGUGGAAUGUGUGCCAGUAUCUCGCAGAUAUUUCCAUACAUUUCUUAU_CAGCAUACUUUUUU_____ ..((((.........(((((((.((((........))))...)))))))....((((((((((..((((((.....))))))..)))))))))).....))))............... (-13.57 = -17.07 + 3.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:34 2011