| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,789,870 – 1,789,961 |
| Length | 91 |
| Max. P | 0.690149 |
| Location | 1,789,870 – 1,789,961 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 79.69 |
| Shannon entropy | 0.40100 |
| G+C content | 0.45681 |
| Mean single sequence MFE | -25.60 |
| Consensus MFE | -15.55 |
| Energy contribution | -17.82 |
| Covariance contribution | 2.27 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.690149 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1789870 91 - 27905053 AAUUUUUCCACGGUGCAUCGGCACCAUCGGAAUCAGAGAGUAAACUUUACAUUUGUGGAGGUUGUUGUCUGUCGGCUGGAGCUAGGAAUAC .....((((..(((((....))))).((((...((((.(((((.((((((....)))))).))))).))))....)))).....))))... ( -28.10, z-score = -2.12, R) >droSim1.chr3R 1825128 91 - 27517382 AAUUUUUUCACGGUGCAUCGGCACCAUCGGAAUCAGAGAGUAAACUUUACAUUUGUGGAGGUUGUUGUCUGUCGAGUGGAGCUGGGAAUAC .....(((((((((((....))))).((((...((((.(((((.((((((....)))))).))))).)))))))))))))).......... ( -27.60, z-score = -2.15, R) >droSec1.super_6 1899589 91 - 4358794 AAUUUUUUCACGGUGCAUCGGCACCAUCGGAAUCAGAGAGUAAACUUUACAUUUGUGGAGGUUGUUGUCUGUCGAGUGGAGCUGGGAAUAC .....(((((((((((....))))).((((...((((.(((((.((((((....)))))).))))).)))))))))))))).......... ( -27.60, z-score = -2.15, R) >droYak2.chr3R 17735519 87 - 28832112 ----UUUUCCCGGUGCAUCGGCGCCAUCGGAAUCAGAGAGCAAACUUUACAUUUGUGUAGGUUGUUGUCUGUCGGCUGGUGCUGGGAAUAC ----..((((((((((....)))))(((((...((((.(((((.((.(((....))).)).))))).))))....)))))...)))))... ( -33.50, z-score = -3.18, R) >droEre2.scaffold_4770 2055517 90 - 17746568 -AAUUUCCCCCGGUGCAUCGGCACCAUCGGAAUCAGAGAGUAAACUUUACAUUUGUGUAGGUCGUUGUCUGUCGGUUGUGGCUGGGAAUAC -...((((((((((((....)))))(((((...((((.((..(.((.(((....))).)).)..)).)))))))))...))..)))))... ( -26.00, z-score = -0.80, R) >droAna3.scaffold_13340 5377407 73 + 23697760 ACUUUAUUUUCAGUGCACUUG---GAAUGGAAUCAGAGAGUAAAGUUUACAUU----GGAGCUGCUGUU-----------GUUGGGAAUAC ....((((..((((((.(((.---((......)).))).))).(((((.....----.)))))......-----------.)))..)))). ( -10.80, z-score = 1.17, R) >consensus AAUUUUUUCACGGUGCAUCGGCACCAUCGGAAUCAGAGAGUAAACUUUACAUUUGUGGAGGUUGUUGUCUGUCGGCUGGAGCUGGGAAUAC .................(((((.(((((((...((((.(((((.((((((....)))))).))))).)))))))).))).)))))...... (-15.55 = -17.82 + 2.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:33 2011