| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,755,952 – 1,756,028 |
| Length | 76 |
| Max. P | 0.766017 |
| Location | 1,755,952 – 1,756,028 |
|---|---|
| Length | 76 |
| Sequences | 6 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 87.54 |
| Shannon entropy | 0.24612 |
| G+C content | 0.51631 |
| Mean single sequence MFE | -25.83 |
| Consensus MFE | -20.27 |
| Energy contribution | -21.33 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.766017 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1755952 76 + 27905053 GGACAGACGAGAGCGGUAAAGUUUACUGCGGUGAUGGAGUGCGGAGGAAGAUCCUUAUUCAGCUCCUUCGUCCUAU ((((........((((((.....))))))...((.(((((...((((.....)))).....))))).))))))... ( -27.50, z-score = -2.24, R) >droAna3.scaffold_13340 5346040 73 - 23697760 GGACAGACGAACGUGGUAAAGUUUACUGCGGUGAUAGAGUGCGGGGGUAGCUUAUAUUCCAGGUCCUUCAUAU--- ((((.......((..(((.....)))..)).............((((((.....))))))..)))).......--- ( -18.20, z-score = -0.37, R) >droEre2.scaffold_4770 2022484 76 + 17746568 GGACAGACGAGCGCGGUAAAGUUUACUACGGUGAUGGAGUGCGGAGGAAGAUCCUUAUUCAGCUCCUUCGUCCUUU ((((..(.(((((((.(.....((((....))))...).))).((((.....)))).....)))).)..))))... ( -24.90, z-score = -1.36, R) >droYak2.chr3R 17700385 76 + 28832112 GGACAGACAAGCGCGGUAAAGUUUACUGCGGUGAUGCAGUGUGGAGGAAGAUCCCUAUUCAGCUCCUUCGUCCUUU ((((...((..(((((((.....))))))).)).........((((((.((.......))...))))))))))... ( -22.60, z-score = -0.75, R) >droSim1.chr3R 1790729 76 + 27517382 GGACAGACGAGCGCGGUAAAGUUUACUGCGGUGAUGGAGUACGGAGGAAGAUCCUUAUUCAGCUCCUUCGUCCUUU ((((.....(.(((((((.....))))))).)((.(((((...((((.....)))).....))))).))))))... ( -28.50, z-score = -2.56, R) >droSec1.super_6 1864164 76 + 4358794 GGACAGACGGGCGCGGUAAAGUUUACUGCGGUGAUGGAGUGCGGAGGAAGAUCCUCAUUCAGCUCCUUCGUCCGUU .....(((((((((((((.....))))))...((.(((((...((((.....)))).....))))).))))))))) ( -33.30, z-score = -3.18, R) >consensus GGACAGACGAGCGCGGUAAAGUUUACUGCGGUGAUGGAGUGCGGAGGAAGAUCCUUAUUCAGCUCCUUCGUCCUUU ((((.......(((((((.....)))))))..((.(((((...((((.....)))).....))))).))))))... (-20.27 = -21.33 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:31 2011