| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,754,938 – 1,755,035 |
| Length | 97 |
| Max. P | 0.815029 |
| Location | 1,754,938 – 1,755,035 |
|---|---|
| Length | 97 |
| Sequences | 11 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 86.10 |
| Shannon entropy | 0.28207 |
| G+C content | 0.41636 |
| Mean single sequence MFE | -26.96 |
| Consensus MFE | -22.80 |
| Energy contribution | -22.42 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.815029 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1754938 97 - 27905053 -----------AUUGCGCACAUUGCAUUGCAUUCAUAAAUUUCGGAAUGCCAUUAGUUUUACAUUUGCGGUUUGUGCUCGGGGAUAACCGCAAAGUGAAAAGCCGCAA -----------.((((((..........((((((..........))))))......((((((.(((((((((.((.(....).))))))))))))))))).).))))) ( -28.10, z-score = -1.16, R) >droSec1.super_6 1863180 97 - 4358794 -----------AUUGCGCACAUUGCAUUGCAUUCAUAAAUUUCGGAAUGCCAUUAGUUUUACAUUUGCGGUUUGUGCUCGGGGAUAACCGCAAAGUGAAAAGCCGCAA -----------.((((((..........((((((..........))))))......((((((.(((((((((.((.(....).))))))))))))))))).).))))) ( -28.10, z-score = -1.16, R) >droSim1.chr3R 1789753 97 - 27517382 -----------AUUGCGCACAUUGCAUUGCAUUCAUAAAUUUCGGAAUGCCAUUAGUUUUACAUUUGCGGUUUGUGCUCGGGGAUAACCGCAAAGUGAAAAGCCGCAA -----------.((((((..........((((((..........))))))......((((((.(((((((((.((.(....).))))))))))))))))).).))))) ( -28.10, z-score = -1.16, R) >droYak2.chr3R 17699418 92 - 28832112 -----------AUUGCGCA-----CAUUGCAUUCAUAAAUUUCGGAAUGCCAUUAGUUUUACAUUUGCGGUUUGUGCUCGGGGAUAACCGCAAAGUGAAAAGCCGCAA -----------.((((((.-----....((((((..........))))))......((((((.(((((((((.((.(....).))))))))))))))))).).))))) ( -28.10, z-score = -1.82, R) >droEre2.scaffold_4770 2021526 92 - 17746568 -----------AUUGUGCA-----CAUUGCAUUCAUAAAUUUCGGAAUGCCAUUAGUUUUACAUUUGCGGCUUGUGCUCGGGGAUAACCGCAAAGUGAAAAGCCGCAA -----------.((((((.-----....((((((..........))))))......((((((.(((((((.((((.(....).))))))))))))))))).).))))) ( -26.20, z-score = -1.13, R) >droAna3.scaffold_13340 5344997 90 + 23697760 -------------AGCGCA-----CAUUGCAUUCAUAAAUUUGGGAAUGCCAUUAGUUUUACAUUUGCGGUUUGUGCUUGGGGAUAACCGCAAAGUGAAAAGCCGCAA -------------.((((.-----....((((((..........))))))......((((((.(((((((((.((.(....).))))))))))))))))).).))).. ( -27.20, z-score = -1.47, R) >droPer1.super_0 4387222 92 - 11822988 ---------------UACACGGGGCAUUGCAUUCAUAAAUUUUGGAAUGCCAUUAGUUUUACAUUUGCGGUUUGUGCU-GGGGAUAACCGCAAAGUGAAAAGCCGCAA ---------------....(((((((((.((...........)).)))))).....((((((.(((((((((....(.-...)..)))))))))))))))..)))... ( -29.10, z-score = -2.18, R) >dp4.chr2 14765151 92 + 30794189 ---------------UACACGGGGCAUUGCAUUCAUAAAUUUUGGAAUGCCAUUAGUUUUACAUUUGCGGUUUGUGCU-GGGGAUAACCGCAAAGUGAAAAGCCGCAA ---------------....(((((((((.((...........)).)))))).....((((((.(((((((((....(.-...)..)))))))))))))))..)))... ( -29.10, z-score = -2.18, R) >droWil1.scaffold_181130 5114736 107 + 16660200 AAAAACACAUACACACACACACGACGUUGCAUUCAUAAAUUUUGGAAUGCCAUUAGUUUUACAUUUGUGGUUUGUGCU-GAGGAUAACCGCAAAGUGAAAAGCCGCAA ......................(.((..((((((..........))))))......((((((.(((((((((....(.-...)..)))))))))))))))...))).. ( -19.50, z-score = 0.75, R) >droVir3.scaffold_12822 1933384 91 + 4096053 -------------CACACUU---GUAGUGCAUUCAUAAAUUUGCGAGUGCCAUUAGUUUUACAUUUGCGGUUUAUGCU-GAGGAUAACCGCAAAGUGAAAAGCCGCAA -------------......(---(..((((((((..........))))))......((((((.(((((((((....(.-...)..))))))))))))))).))..)). ( -24.10, z-score = -1.33, R) >droMoj3.scaffold_6540 11025870 94 - 34148556 -------------CAUAUGUGAAGCAGUGCAUUCAUAAAUUUGCGAGUGCCAUUAGUUUUACAUUUGCGGUUUAUGCU-GAGGAUAACCGCAAAGUGAAAAGCCGCAA -------------...((((((((((((((((((..........))))).)))).)))))))))(((((((((..(((-..((....))....)))...))))))))) ( -29.00, z-score = -2.65, R) >consensus _____________UGCGCAC___GCAUUGCAUUCAUAAAUUUCGGAAUGCCAUUAGUUUUACAUUUGCGGUUUGUGCU_GGGGAUAACCGCAAAGUGAAAAGCCGCAA ............................((((((..........))))))......((((((.(((((((.((((.(....).)))))))))))))))))........ (-22.80 = -22.42 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:30 2011