| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,397,573 – 6,397,674 |
| Length | 101 |
| Max. P | 0.721591 |
| Location | 6,397,573 – 6,397,674 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.74 |
| Shannon entropy | 0.33516 |
| G+C content | 0.52047 |
| Mean single sequence MFE | -34.79 |
| Consensus MFE | -22.43 |
| Energy contribution | -23.63 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.721591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6397573 101 + 23011544 GAAUG-AGGGAAUCGAUUCGCUGUAACCUGGUGCCCGUGCA------------------ACUGCAAAUGGCCAGGACAUUGGUCCCUACAAUGUAUCAAAUAGUCAGCGCUCCUUCCCAA .....-.(((((..((..(((((...((((((.....(((.------------------...)))....))))))((((((.......))))))..........))))).)).))))).. ( -33.50, z-score = -2.44, R) >droEre2.scaffold_4929 15323331 114 + 26641161 -----GAAUGAAUCGAUUCGCUGGAACCUGGUGUCCGUGCGAAAGUGCCACCAGUUUCCACUGCAAAUGGCCAGGACAUGGGCC-CUACAAUGUAUCAAAUAGUCAGUGCUCCUGCCCAA -----((((......))))(((((((.((((((...(..(....)..))))))).)))))..))...(((.((((((((.(((.-.................))).))).))))).))). ( -38.37, z-score = -2.29, R) >droYak2.chr2L 15817432 119 - 22324452 GAAUG-AGUGAAUCGAUACGCCGGAACCUGGUGGCCGUGCAGAAGUGCCACCCGUUUCAACUGCAAAUGGCCAGGACAUUGGCCCCCACAAUGUAUCAAAUAGUCAGAGCUCCUUUCCAA (((.(-(((((...(((((((.(((((..(((((((........).)))))).)))))....))....((((((....))))))........)))))......))...))))..)))... ( -33.30, z-score = -0.63, R) >droSec1.super_5 4465292 102 + 5866729 GAAUGGCGGGAAUCGAUUCGCUGUAACCUGGUGCCCGUGCA------------------ACUGCAAAUGGCCAGGACAUUGGCCACUACAAUGUAUCAAACAGUCAGCGCUCCCUCCCAA ....((.((((..((....(((((..((((((.....(((.------------------...)))....))))))((((((.......)))))).....)))))...)).)))).))... ( -33.90, z-score = -1.55, R) >droSim1.chr2L 6201739 102 + 22036055 GAAUGGAGGAAAUCGAUUCGCUGUUACCUGGUGGCCGUGCA------------------ACUGCAAAUGGCCAGGACAUUGGCCACUACAAUGUAUCAAACAGUCAGCGCUCCCUCCCAA ....(((((....((....((((((.((((((.(...(((.------------------...)))..).))))))((((((.......))))))....))))))...))...)))))... ( -34.90, z-score = -2.11, R) >consensus GAAUGGAGGGAAUCGAUUCGCUGUAACCUGGUGCCCGUGCA__________________ACUGCAAAUGGCCAGGACAUUGGCCACUACAAUGUAUCAAAUAGUCAGCGCUCCUUCCCAA .......((((...((..(((((...((((((.....((((....................))))....))))))((((((.......))))))..........))))).))..)))).. (-22.43 = -23.63 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:12 2011