| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,739,912 – 1,740,010 |
| Length | 98 |
| Max. P | 0.791999 |
| Location | 1,739,912 – 1,740,010 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 72.50 |
| Shannon entropy | 0.49161 |
| G+C content | 0.36324 |
| Mean single sequence MFE | -20.53 |
| Consensus MFE | -7.56 |
| Energy contribution | -7.67 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.791999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1739912 98 + 27905053 AAGCAAUAAGUGCAAAGAAAUGGCAAAAAAAAAAAAAAAACGUCAAAAAGCAGACAGCACAAAUAUGUCUGUGAACAGACGGCAUGGUUGCAUUUUUC ..(((((..((((..(....)...................((((.....(((((((.........))))))).....)))))))).)))))....... ( -23.30, z-score = -3.09, R) >droPer1.super_0 4368433 79 + 11822988 ------------AAGAAAAAUAAUAUACAAAAAAGUA----ACCGAA--GCAGACAACGUGAAUAUGAAUGUACACAUGUG-CCUGCUUGCAUUUUUU ------------..(((((((....(((......)))----....((--((((...(((((..(((....)))..))))).-.))))))..))))))) ( -14.20, z-score = -1.98, R) >dp4.chr2 14752348 79 - 30794189 ------------AAGAAAAAUAAUAUACAAAAAAGUA----ACCGAA--GCAGACAACGUGAAUAUGAAUGUACACAUGUG-CCUGCUUGCAUUUUUU ------------..(((((((....(((......)))----....((--((((...(((((..(((....)))..))))).-.))))))..))))))) ( -14.20, z-score = -1.98, R) >droEre2.scaffold_4770 2006272 89 + 17746568 AAGCAAUAAGUGCAAAGAAAUGGUAAAAAAAA---------GUCGAAGAGCAGACAGCAGAAAUAUGUCUGUGCACAGACGGCAUGGUUGCAUUUUUC ..(((((..((((..(....)...........---------(((.....(((((((..(....).))))))).....))).)))).)))))....... ( -22.80, z-score = -2.56, R) >droYak2.chr3R 17685316 92 + 28832112 AAGCAAUAAGUGCAAAAAAAAAAUGCUAAAAAGAA------GUCCAAAAGCAGACAGCACAAAUAUGUAUGUGCGCAGACGGCAUGGUUGCAUUUUUC .......((((((((.......(((((........------(((........))).(((((........)))))......)))))..))))))))... ( -20.00, z-score = -1.13, R) >droSec1.super_6 1847936 90 + 4358794 AAGCAAUAAGUGCAAAGAAAUGGCAAAAAAAA--------CGUCGAAAAGCAGACAGCACAAAUAUGUCUGUGCACAGACGGCAUGGUUGCAUUUUUC ..(((.....)))...((((..((((......--------((((.....(((((((.........))))))).....))))......))))...)))) ( -24.60, z-score = -2.60, R) >droSim1.chr3R 1773332 90 + 27517382 AAGCAAUAAGUGCAAAGAAAUGGCAAAAAAAA--------CGUCGAAAAGCAGACAGCACAAAUAUGUCUGUGCACAGACGGCAUGGUUGCAUUUUUC ..(((.....)))...((((..((((......--------((((.....(((((((.........))))))).....))))......))))...)))) ( -24.60, z-score = -2.60, R) >consensus AAGCAAUAAGUGCAAAGAAAUGGUAAAAAAAA_A_______GUCGAAAAGCAGACAGCACAAAUAUGUCUGUGCACAGACGGCAUGGUUGCAUUUUUC .................................................(((..((.........((((((....))))))...))..)))....... ( -7.56 = -7.67 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:25 2011