| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,736,747 – 1,736,799 |
| Length | 52 |
| Max. P | 0.629581 |
| Location | 1,736,747 – 1,736,799 |
|---|---|
| Length | 52 |
| Sequences | 6 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 67.45 |
| Shannon entropy | 0.58927 |
| G+C content | 0.39784 |
| Mean single sequence MFE | -10.78 |
| Consensus MFE | -5.00 |
| Energy contribution | -4.84 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.629581 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1736747 52 - 27905053 --UUCCAGCCACAGGC--GGAAAGGGUGGAUUAAAGAAUC---AUACAUAGUUUUUCAA --((((.(((...)))--))))...(((((((....))))---.)))............ ( -9.10, z-score = -1.06, R) >droEre2.scaffold_4770 2003128 54 - 17746568 --UUCCAGCCACGGGCGUUAAAGGGGUGGAUUAAGGAAUU---ACAAAUAGUUGUUUAA --.((((.((.(..........))).))))(((((.((((---(....))))).))))) ( -10.20, z-score = -0.60, R) >droYak2.chr3R 17681845 56 - 28832112 UUUUUCAGCCACAGGCUAUGAAAGGGUGGAUUAAAGAAUU---AUAAAUAGUUGUUUAA ((((((((((...)))..))))))).....(((((.((((---(....))))).))))) ( -8.50, z-score = -0.65, R) >droSec1.super_6 1844905 56 - 4358794 -UUUCCAGCCACAGGC--GGAAAGGGUGGAUUGAAGAAUCCAUAUACAUAGUUUUUCAG -(((((.(((...)))--)))))(.(((((((....)))))))...)............ ( -14.40, z-score = -2.49, R) >droSim1.chr3R 1770266 56 - 27517382 -UUUCCAGCCACAGGC--GGAAAGGGUGGAUUGAAGAAUCCAUAUACAUAGUUUUUCAG -(((((.(((...)))--)))))(.(((((((....)))))))...)............ ( -14.40, z-score = -2.49, R) >droWil1.scaffold_181130 5096747 53 + 16660200 --UUUUGGCUUUGC----UGCGAGGGUUGCCAAACGAAACUAGAAAACUUUAAGAUCUG --.((((((...((----(.....))).))))))......................... ( -8.10, z-score = 0.41, R) >consensus __UUCCAGCCACAGGC__GGAAAGGGUGGAUUAAAGAAUC___AUAAAUAGUUGUUCAA ...((((.((.............)).))))............................. ( -5.00 = -4.84 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:24 2011