| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,720,294 – 1,720,414 |
| Length | 120 |
| Max. P | 0.811795 |
| Location | 1,720,294 – 1,720,414 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.25 |
| Shannon entropy | 0.22420 |
| G+C content | 0.36607 |
| Mean single sequence MFE | -30.83 |
| Consensus MFE | -21.49 |
| Energy contribution | -25.05 |
| Covariance contribution | 3.56 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.811795 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1720294 120 + 27905053 UGACCAAAUAUAUUGUCCUGAAAUGGCAAUAUAUUUGCAUUUGGAAUGACCUCAUAUUGCGCAUUCGACUAGUUGAACAGUACUAGUUGAAAGUGAGUCUGCUUUGGACUUCAAUUUAUU ....(((((((((((.((......)))))))))))))....((((.(((..........(((.((((((((((........)))))))))).)))(((((.....)))))))).)))).. ( -33.60, z-score = -3.35, R) >droEre2.scaffold_4770 1987903 105 + 17746568 UGGC-AAACAUAUUGCUCUGAAAUGGCAAUACAUUUGCAUUUGGACUGACCUCAAAU--------CGACUAGUUAAACAGU------UAGAAGUGCGUCUGCUUGGGAUUUCAAUUUGUU .(((-(.((.(((((((.......))))))).....((((((.(((((.........--------............))))------)..)))))))).))))................. ( -19.90, z-score = 0.61, R) >droSec1.super_6 1828223 120 + 4358794 UGCCCAAAUAUAUUGUCCUGCAAUGGCAAUAUAUUUGCAUUUGGAAUGACCUCAUAUUGCGCAUUCGACUAGUUGUACAGUAUUAGUUGAAAGUGCGUCUGCUUUGGACUUCAAUUUAUU ....(((((((((((.((......)))))))))))))...(((((.............((((.((((((((((........)))))))))).))))((((.....)))))))))...... ( -34.90, z-score = -3.09, R) >droSim1.chr3R 1753694 120 + 27517382 UGCCCAAAUAUAUUGUCCUGCAAUGGCAAUAUAUUUGCAUUUGGAAUGACCUCAUAUUGCGCAUUCGACUAGUUGUACAGUAUUAGUUGAAAGUGCGUCUGCUUUGGACUUCAAUUUAUU ....(((((((((((.((......)))))))))))))...(((((.............((((.((((((((((........)))))))))).))))((((.....)))))))))...... ( -34.90, z-score = -3.09, R) >consensus UGCCCAAAUAUAUUGUCCUGAAAUGGCAAUAUAUUUGCAUUUGGAAUGACCUCAUAUUGCGCAUUCGACUAGUUGAACAGUAUUAGUUGAAAGUGCGUCUGCUUUGGACUUCAAUUUAUU ....(((((((((((((.......)))))))))))))...(((((.............((((.((((((((((........)))))))))).))))((((.....)))))))))...... (-21.49 = -25.05 + 3.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:22 2011