| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,714,316 – 1,714,424 |
| Length | 108 |
| Max. P | 0.610669 |
| Location | 1,714,316 – 1,714,424 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 68.25 |
| Shannon entropy | 0.60901 |
| G+C content | 0.36720 |
| Mean single sequence MFE | -22.50 |
| Consensus MFE | -11.27 |
| Energy contribution | -13.00 |
| Covariance contribution | 1.73 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.610669 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1714316 108 - 27905053 --ACCCAUUUUCGUUUGAGCAUCUUUCUUGCGGUUGAUCUACUCGAAUUAACAGCUUUAAUUGGAGUAACUCAGCAGAAGGGCUUC--UUUUUUAAUUCAAUUUUUAAAAGC --.(((.....(((..(((.....)))..)))(((((..(((((.((((((.....)))))).)))))..)))))....)))....--.(((((((........))))))). ( -25.30, z-score = -2.17, R) >droAna3.scaffold_13340 5306928 99 + 23697760 --------UUUUGUUACCUUUCGCUUUUCAUCUUUUUUAAAAGAAGACCCUUUAAUGAAAUUUAAGCUCGUCGGCUCAGGGAUA----UUUUUGGCUUUGCUUGUUGAAAA- --------........((((..(((.....(((((....))))).(((..(((((......)))))...))))))..))))...----((((..((.......))..))))- ( -14.80, z-score = 1.01, R) >droEre2.scaffold_4770 1982456 105 - 17746568 UGCUCCGUUUUCGUUGGAGCAUCCUUCUUGUGGUUGAUCUGCUCGAAUUAACAGCUUUAGUUGGACUAACUCAGC---AGGGCUUUC-UUUUUUAAUGU-AUCCUAGAGC-- .((((.(((...(((.(((((((..((....))..))..))))).))).)))((((((.(((((......)))))---))))))...-...........-......))))-- ( -23.50, z-score = 0.21, R) >droYak2.chr3R 17659338 106 - 28832112 ---AUCAUUUUCGUUCGAGCAUCCUUCUUGUGGUUGAUCUACUCGAAUUAACAGCUGUAAUUGAAGUAGCUCGACAGAAGGGCUUUC-UUUUUUAAUUAAAUUGUACAGC-- ---.........(((((((.(((..((....))..)))...))))))).....((((((...((((.(((((.......)))))..)-))).............))))))-- ( -21.89, z-score = -0.52, R) >droSec1.super_6 1822404 110 - 4358794 --ACCCAUUUUCGUUUGAGCAUCCUUCUUGCUGUUGAUCUACUCGAAUUAACAGCUUUAAUUGGAGUAACGCAGCAGAAGGGCUUUCUUUUUUUAAUUCAAUUUUUUUAAGG --..............((((..((((((.(((((.....(((((.((((((.....)))))).)))))..)))))))))))))))........................... ( -26.60, z-score = -2.55, R) >droSim1.chr3R 1747815 109 - 27517382 --ACCCAUUUUCGUUUGAGCAUCCUUCUUGCGGUUGAUCUACUCGAAUUAACAGCUUUAAUUGGAGUAACGCAGCAGAAGGGCUUUC-UUUUUUAAUUCAAUUUUUUAAAGG --..((..........((((..((((((....((((...(((((.((((((.....)))))).)))))...))))))))))))))..-...(((((.........))))))) ( -22.90, z-score = -1.06, R) >consensus __ACCCAUUUUCGUUUGAGCAUCCUUCUUGCGGUUGAUCUACUCGAAUUAACAGCUUUAAUUGGAGUAACUCAGCAGAAGGGCUUUC_UUUUUUAAUUCAAUUUUUGAAAG_ ................((((..((((((....((((...(((((.((((((.....)))))).)))))...))))))))))))))........................... (-11.27 = -13.00 + 1.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:21 2011