| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,708,849 – 1,708,943 |
| Length | 94 |
| Max. P | 0.908715 |
| Location | 1,708,849 – 1,708,943 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 70.03 |
| Shannon entropy | 0.54843 |
| G+C content | 0.35517 |
| Mean single sequence MFE | -25.07 |
| Consensus MFE | -7.71 |
| Energy contribution | -8.12 |
| Covariance contribution | 0.41 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.908715 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1708849 94 + 27905053 AAUUAGAAAUCAAUUGAGUUAUCAAUUGAUUGGUUU--CAAUUUACACUAUCGGCCCGCUUCUGUUGUUAUCAA----CACAAGGAGCU----GCCUGUUUUCC .....(((((((((..(........)..))))))))--).............(((..((((((((((....)))----)...)))))).----)))........ ( -25.30, z-score = -3.31, R) >droSim1.chr3R 1742306 94 + 27517382 AAUUAGAAAUCAAUUGAGUUAUCAAUUGAUUGGUUU--CAAUUUACACUUGCGGCCCGCUUCUGUUGUUAUCAA----CACAAGGAGCU----GCCUGUUUGCC .....(((((((((..(........)..))))))))--).......((..(((((.(.(((.(((((....)))----)).)))).)))----))..))..... ( -27.10, z-score = -2.92, R) >droSec1.super_6 1816739 97 + 4358794 AAUUAGAAAUCAAUUGAGUUAUCAAU-GAUUGGUUU--CAAUUUACACUUGCGGCCCGCUUCUGUUGUUAUCAA----CACAAGGAGCUAGCUGCCUGUUUGCC .....((((((((((((....)))..-.))))))))--).......((..(((((..((((((((((....)))----)...))))))..)))))..))..... ( -27.40, z-score = -2.52, R) >droYak2.chr3R 17654201 93 + 28832112 AAUUAGAAAUCAAUUGAGUUAUCAAUUGAUUGGUUU--CAAUUUACACUUGCGGCCCGCUUUUGUUGUGAUCAA----CACAAGAAGCA-----GCAGUUUGCC .....(((((((((..(........)..))))))))--).........((((.((...(((.(((((....)))----)).)))..)).-----))))...... ( -24.10, z-score = -2.09, R) >droEre2.scaffold_4770 1977183 93 + 17746568 AAUUAGAAAUCAAUUGAGUUAUCAAUUGAUUGGUUU--CAAUUUACACUUGCGGCCCGCUUCUGUUGUUAUCAA----CACAAGAAGCA-----GCCGCUUGCC .....(((((((((..(........)..))))))))--)........(..(((((..((((((((((....)))----)...)))))).-----)))))..).. ( -31.90, z-score = -4.99, R) >dp4.chr2 14725637 104 - 30794189 AAUUAUGUAUCAAUUGAGUUACCACUUAUUUGAUUAGGCAAUAUGGGCGUGUUAUUAAGAUAUGUUAUUAAGAUAUGUUAUUAAGAUUGUUAUGUCCAGAUUCU .....((((((((.(((((....))))).)))))...)))...((((((((...((((((((((((.....)))))))).))))......))))))))...... ( -21.00, z-score = -1.20, R) >droPer1.super_0 4341483 91 + 11822988 AAUUAUGUAUCAAUUGAGUUACCACUUAUUUGAUUAGGCAAUAUGGGCGUGUUAUUAAUAUAUGU-------------UAUUAAGAUUGUUAUGUCCAGAUUCU .....((((((((.(((((....))))).)))))...)))...((((((((...((((((.....-------------))))))......))))))))...... ( -18.70, z-score = -1.33, R) >consensus AAUUAGAAAUCAAUUGAGUUAUCAAUUGAUUGGUUU__CAAUUUACACUUGCGGCCCGCUUCUGUUGUUAUCAA____CACAAGGAGCU____GCCCGUUUGCC ......(((((((((((........))))))))))).....................((((((...................))))))................ ( -7.71 = -8.12 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:18 2011