| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,702,675 – 1,702,766 |
| Length | 91 |
| Max. P | 0.768879 |
| Location | 1,702,675 – 1,702,766 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 65.00 |
| Shannon entropy | 0.55449 |
| G+C content | 0.55741 |
| Mean single sequence MFE | -31.20 |
| Consensus MFE | -13.64 |
| Energy contribution | -13.76 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.768879 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1702675 91 - 27905053 ------------------------AGAGCAGCAACAGUUGCUGCCUCCGAAUGCUCCGCAAAUAAGCAACCAGCCGGUAGCAGCAAUUAGCGGCAACAAUGUCAAGGAAACAGCA ------------------------...((.((...(((((((((..(((..((....((......))...))..)))..))))))))).))((((....))))..(....).)). ( -28.80, z-score = -1.95, R) >droSim1.chr3R 1736299 90 - 27517382 -------------------------GAGCAGCAACAGUUGCUGCCUCCGAAUGCUCCGCAAAUAAGCAACCAGCCGGUAGCAGCAAUUAGCGGCAACAAUGUCAAGGAAACAGCA -------------------------..((.((...(((((((((..(((..((....((......))...))..)))..))))))))).))((((....))))..(....).)). ( -28.80, z-score = -2.00, R) >droSec1.super_6 1810802 90 - 4358794 -------------------------GAGCAGCAACAGUUGCUGCCUCCGAAUGCCCCGCAAAUAAGCAACCAGCCGGUAGCAGCAAUUAGCGCCAACAAUGUUAAGGAAACAGCA -------------------------..((.((...(((((((((..(((..((....((......))...))..)))..))))))))).))..............(....).)). ( -26.40, z-score = -2.03, R) >droEre2.scaffold_4770 1971426 82 - 17746568 ---------------------------------ACAGUUGCUGCCGCCCAAUGCUCCGCAAAUAAGCAACCAGCCGGUGGCAGCAAUUAGCGCCAACAAUGUCAAGGAAACAGUA ---------------------------------..(((((((((((((....(((..((......))....))).))))))))))))).................(....).... ( -26.70, z-score = -1.95, R) >anoGam1.chr2R 35804434 114 - 62725911 AACCGGAUCAAAGGAACCGCUUGCCGAUCCACCGCGACCCCUGCCCGCCCAGCCGCUCGAAAUGGUUCGGCGGCGGGUGAAGGCGGCCCCCGGC-UCCACGACGAGCGACGAGCA ....(((((.(((......)))...)))))...((.....((((((((((.(((((.((((....))))))))))))))..)))))......((-((......)))).....)). ( -45.30, z-score = 0.06, R) >consensus _________________________GAGCAGCAACAGUUGCUGCCUCCGAAUGCUCCGCAAAUAAGCAACCAGCCGGUAGCAGCAAUUAGCGGCAACAAUGUCAAGGAAACAGCA ...................................(((((((((..(((..((....((......))...))..)))..)))))))))........................... (-13.64 = -13.76 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:17 2011