| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,700,832 – 1,700,934 |
| Length | 102 |
| Max. P | 0.586988 |
| Location | 1,700,832 – 1,700,934 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 70.81 |
| Shannon entropy | 0.47784 |
| G+C content | 0.30915 |
| Mean single sequence MFE | -23.58 |
| Consensus MFE | -10.36 |
| Energy contribution | -11.18 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1700832 102 - 27905053 -----------UUAC-UUACCAAUACUUCUGAGUCCUGAUGAAGGAUAUAC----AGUAUUUGAAUAUUGUCCAGGAGCUAUAUUUCCAAGAAAGGAUUGCUCUUGAUAGUGUAAUCA -----------....-...(.((((((..((.(((((.....))))).)).----)))))).).((((((((.((((((......(((......)))..))))))))))))))..... ( -25.80, z-score = -1.96, R) >droSim1.chr3R 1734497 112 - 27517382 UAAAAGAAAUAUUGC-UUUCUAAUACUUUUUGUUCCCGAUGAAGGAUAUAU----AUUACUUAAAUAUUGUUCAGGAACUA-AUUUCCAACGAAGGAUUGUUCUUGAUAGUGUAAUCA ...(((.(((((..(-((((....((.....)).......)))))....))----))).)))..(((((((.(((((((..-...(((......)))..))))))))))))))..... ( -21.10, z-score = -1.28, R) >droSec1.super_6 1808951 112 - 4358794 UACAAGAAAUAUUGC-UUUCUAAUACUUUUUGUACCCGAUGAAGGAUAUAU----AUUACUUAAAUAUUGUUCAGGAACUA-AUUUCCAACGAAGGAUUGCUCUUGAUAGUGUAAUCA ((((((((.(((((.-....))))).))))))))..((.((((.(((((.(----(.....)).))))).))))((((...-..))))..))...((((((.((....)).)))))). ( -23.90, z-score = -2.37, R) >droYak2.chr3R 17645569 118 - 28832112 UAUCCCGACUAUUGCAUUUGUAUUGCAUUUUUGCCUUGUCGAGAGGUACAUAAAAAAUACCACAACAUUUUUCAGGGAAUAUAUUUCCAAUGAAAGAUUAAUCUUAAUGGUGAAAUCG .....(((....((((.......)))).(((..((..((..(((((((.........)))).....((((((((.((((.....))))..))))))))...)))..))))..)))))) ( -23.50, z-score = -1.36, R) >consensus UA_AAGAAAUAUUGC_UUUCUAAUACUUUUUGGUCCCGAUGAAGGAUAUAU____AUUACUUAAAUAUUGUUCAGGAACUA_AUUUCCAACGAAGGAUUGCUCUUGAUAGUGUAAUCA ................................(((((.....))))).................((((((((.((((((....((((....))))....))))))))))))))..... (-10.36 = -11.18 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:17 2011