| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,695,447 – 1,695,555 |
| Length | 108 |
| Max. P | 0.830134 |
| Location | 1,695,447 – 1,695,555 |
|---|---|
| Length | 108 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.40 |
| Shannon entropy | 0.41331 |
| G+C content | 0.31885 |
| Mean single sequence MFE | -21.05 |
| Consensus MFE | -9.56 |
| Energy contribution | -9.39 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.830134 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1695447 108 - 27905053 UUCAUAAAUCAUUUAAACGCUACAUGAGCAUAACGAAAUUAAAUAACAAU---UUAUUUAUCUGCUCGGAUGAGCG--UUAAGAAAUUAAUAGAGCACCAGCUUACCAAAUCC------- ...........(((.((((((...((((((....((...(((((((....---)))))))))))))))....))))--)).)))........((((....)))).........------- ( -19.60, z-score = -2.66, R) >droPer1.super_0 4328989 117 - 11822988 UUCAUAAAUCACUUAAGCGCUUGAUGAGCAUAU--AAAUUAAAUAAAUAUUCGUUAUUUAUCUGUGUGAAGGAGCGCAUUAACGAAUGUGU-GACCAAGAGCUCCGAAAUUUCUAACUAA ...............(((.((((.....(((((--(...(((((((.......)))))))..))))))..(..(((((((....)))))))-..))))).)))................. ( -20.80, z-score = -0.36, R) >dp4.chr2 14713199 117 + 30794189 UUCAUAAAUCACUUAAGCGCUUGAUGAGCAUAU--AAAUUAAAUAAAUAUUCGUUAUUUAUCUGUGUGAAGGAGCGCAUUAACGAAUGUGU-GACCAAGAGCUCCGAAAUUUCUCACUAA ...............(((.((((.....(((((--(...(((((((.......)))))))..))))))..(..(((((((....)))))))-..))))).)))................. ( -20.80, z-score = -0.16, R) >droAna3.scaffold_13340 5289268 99 + 23697760 UUCAUAAAUCAUUUAAACGCUACUUGAGCAGACCGAAAUUAAAUAAAACA---UUAUUUAUCUGCUUGGAUGAGCG--UUAAGAAAUAAAU-UCCCACUGGAUAU--------------- ...........(((.((((((..(..((((((.......(((((((....---)))))))))))))..)...))))--)).))).......-(((....)))...--------------- ( -20.91, z-score = -3.24, R) >droEre2.scaffold_4770 1963770 108 - 17746568 UUCAUAAAUCAUUUAAACGCUACAUGAGCAUAACCAAAUUAAAUAACAAU---UUAUUUAUCUGCUCGGAUGAGCG--UUAGGAAACUAAUAGAGCACCAGCUUUUGAAAUCC------- ...........((((((.(((....(((((.........(((((((....---)))))))..)))))((.((..((--((((....))))).)..))))))).))))))....------- ( -22.50, z-score = -3.03, R) >droYak2.chr3R 17640296 109 - 28832112 UUCAUAAAUCAUUUAAACGCUACAUGAGCAUAACGAAAUUAAAUAACCAU---UUAUUUAUCUGCUCGGAUGAGCG--UUAAGAAAUUAAUAGAGCACCAGCUCUUCUAAUUCC------ ...........(((.((((((...((((((....((...(((((((....---)))))))))))))))....))))--)).)))(((((..(((((....)))))..)))))..------ ( -24.60, z-score = -3.85, R) >droSec1.super_6 1803663 108 - 4358794 UUCAUAAAUCAUUUAAACGCUACAUGAGCAUAACGAAAUUAAAUAACAAU---UUAUUUAUCUGCUCGGAUGAGCG--UUAAGAAAUUAAUAGAGCACCAGCUUACCAAAUCC------- ...........(((.((((((...((((((....((...(((((((....---)))))))))))))))....))))--)).)))........((((....)))).........------- ( -19.60, z-score = -2.66, R) >droSim1.chr3R 1729195 108 - 27517382 UUCAUAAAUCAUUUAAACGCUACAUGAGCAUAACGAAAUUAAAUAACAAU---UUAUUUAUCUGCUCGGAUGAGCG--UUAAGAAAUUAAUAGAGCACCAGCUUACCAAAUCC------- ...........(((.((((((...((((((....((...(((((((....---)))))))))))))))....))))--)).)))........((((....)))).........------- ( -19.60, z-score = -2.66, R) >consensus UUCAUAAAUCAUUUAAACGCUACAUGAGCAUAACGAAAUUAAAUAACAAU___UUAUUUAUCUGCUCGGAUGAGCG__UUAAGAAAUUAAUAGAGCACCAGCUUACCAAAUCC_______ .................((((...((((((.........(((((((.......)))))))..))))))....))))............................................ ( -9.56 = -9.39 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:16 2011