| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,395,449 – 6,395,548 |
| Length | 99 |
| Max. P | 0.859603 |
| Location | 6,395,449 – 6,395,548 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 71.66 |
| Shannon entropy | 0.42502 |
| G+C content | 0.55969 |
| Mean single sequence MFE | -38.50 |
| Consensus MFE | -18.11 |
| Energy contribution | -19.61 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.859603 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6395449 99 + 23011544 CCCAUCGGUACCACAAGGGA--------GCCAUGAUGCUGCAGCUUCAGCUGGA------GCUGAAGCAGGAGCAAGAGUUGAAUCCUUAGAGCCCUGGCAGCAUCUGAUAAA ...((((((.((.....)).--------)))..((((((((.((((((((....------))))))))(((.((..(((.......)))...))))).)))))))).)))... ( -40.50, z-score = -2.74, R) >droEre2.scaffold_4929 15321240 113 + 26641161 CCCAUCGGUACCACAAGGGCCCACCGGUACCAUGGAGCUGCAGCUUCGGCUGGAUCAGGAGCGGGAGCGGGAGCGGGAGCUGCAGGCUGGGAGCCCUGGCAGCAUCAGAUAAA .((((.((((((....((.....)))))))))))).((((((((....)))....((((.((...(((.(.(((....))).)..)))....))))))))))).......... ( -49.00, z-score = -0.75, R) >droSec1.super_5 4463244 78 + 5866729 CCCAUCGGUACCACAAGGGA--------GCCAUGAUGCUGCAGCUUCAGCUGGA------------GC------AGGAGUUG---------AAUCCUUUGAGCAUCAGAUAAA ...((((((.((.....)).--------))).(((((((.(((((((....)))------------))------((((....---------..)))).))))))))))))... ( -27.30, z-score = -1.94, R) >droSim1.chr2L 6199665 84 + 22036055 CCCAUCGGUACCACAAGGGA--------GCCAUGAUGCUGCAGCUUCAGCUGGA------------GCUGGAGCAGGAGUUG---------AAUCCUUGGAGCAUCAGAUAAA ...((((((.((.....)).--------))).(((((((.((((((((((....------------))))))))((((....---------..)))))).))))))))))... ( -37.20, z-score = -3.55, R) >consensus CCCAUCGGUACCACAAGGGA________GCCAUGAUGCUGCAGCUUCAGCUGGA____________GC_GGAGCAGGAGUUG_________AACCCUGGCAGCAUCAGAUAAA ...((((((.((....))..........))).(((((((((.(((((.((................)).)))))(((.(((..........)))))).))))))))))))... (-18.11 = -19.61 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:11 2011