| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,666,198 – 1,666,250 |
| Length | 52 |
| Max. P | 0.522627 |
| Location | 1,666,198 – 1,666,250 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 69.12 |
| Shannon entropy | 0.52069 |
| G+C content | 0.48527 |
| Mean single sequence MFE | -10.27 |
| Consensus MFE | -5.26 |
| Energy contribution | -5.18 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.522627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1666198 52 + 27905053 AACGCAUCGACUUCUGGCCAGCGAUUCCCAUGUAUUUCAUAUCGCAUUGCCG------ ...............(((..(((((....(((.....))))))))...))).------ ( -9.90, z-score = -0.78, R) >droEre2.scaffold_4770 1931158 51 + 17746568 AACGCACUGACUUCUGGCCUGCGAUUCCCAUGUAUUUC-CAUCGCAGUGCCG------ ...............((((((((((.............-.))))))).))).------ ( -14.64, z-score = -2.75, R) >droSim1.chr3R 1694964 52 + 27517382 AACGCAUCGACUUCUGGCCAGUGAUUCCCAUACAUUUCAUAUCGCAUUGCCG------ ...............(((..(((((...............)))))...))).------ ( -7.36, z-score = -0.36, R) >droSec1.super_6 1770061 52 + 4358794 AACGCAUCGACUUCUGGCCAGCGAUUCCCAUACAUUUCAUAUCGCAUUGCCG------ ...............(((..(((((...............)))))...))).------ ( -9.26, z-score = -1.21, R) >droVir3.scaffold_13047 6037415 58 - 19223366 AACGAUUCUGAUUCCGGUAGUUAUUGCCUGUGUGUCUGAUGACGCAAAUAUAUUUCCA ...............(((((...)))))..((((((....))))))............ ( -10.20, z-score = -0.61, R) >consensus AACGCAUCGACUUCUGGCCAGCGAUUCCCAUGUAUUUCAUAUCGCAUUGCCG______ ...............(((..(((((...............)))))...)))....... ( -5.26 = -5.18 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:15 2011