Locus 8786

Sequence ID dm3.chr3R
Location 1,630,012 – 1,630,119
Length 107
Max. P 0.566359
window12066

overview

Window 6

Location 1,630,012 – 1,630,119
Length 107
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 72.41
Shannon entropy 0.35496
G+C content 0.56575
Mean single sequence MFE -29.03
Consensus MFE -21.86
Energy contribution -22.97
Covariance contribution 1.11
Combinations/Pair 1.04
Mean z-score -1.14
Structure conservation index 0.75
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.15
SVM RNA-class probability 0.566359
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 1630012 107 - 27905053
----ACGCACACAACCGCACGUAGC----CAUGCCCACGCGCACACACAGCCGCACUUGCAUGUGGGCAUUCUGCAUGCUCGCAUCCUUGCAUCCACACACACAUCGACAUUCAC
----............(((.((((.----.(((((((((.((.......)))((....))..)))))))).)))).)))..(((....)))........................ ( -28.20, z-score =  -1.46, R)
>droEre2.scaffold_4770 1896265 84 - 17746568
----ACGCACACAACCGCAUGUAGC----CAUGCCCACGCGCACACACAGGCGUACUUGCAUGUGGGUAUUCUGCAUGCUGGCAUCCUUGCA-----------------------
----..(((.....((((((((((.----.(((((((((.(((...((....))...))).))))))))).)))))))).))......))).----------------------- ( -32.90, z-score =  -1.52, R)
>droYak2.chr3R 17582232 97 - 28832112
ACGCACACAACCAACCACAUGUAGCCAUGCAUGCACACGCGCACACACAGCCGCACUUGCUUGUGGACAUUCUGCAUGCUGGCAUCCUUGCAUCCUU------------------
..(((.(((..........))).((((.(((((((.....(..((((.(((.......)))))))..)....))))))))))).....)))......------------------ ( -26.00, z-score =  -0.45, R)
>consensus
____ACGCACACAACCGCAUGUAGC____CAUGCCCACGCGCACACACAGCCGCACUUGCAUGUGGGCAUUCUGCAUGCUGGCAUCCUUGCAUCC____________________
................((((((((......(((((((((.(((..............))).))))))))).))))))))..(((....)))........................ (-21.86 = -22.97 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:11 2011