| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,624,009 – 1,624,121 |
| Length | 112 |
| Max. P | 0.522646 |
| Location | 1,624,009 – 1,624,121 |
|---|---|
| Length | 112 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 82.20 |
| Shannon entropy | 0.37603 |
| G+C content | 0.57247 |
| Mean single sequence MFE | -39.26 |
| Consensus MFE | -19.31 |
| Energy contribution | -19.56 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.522646 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1624009 112 + 27905053 CAGUGUUUCCGUCCCUGCCCAAGCCGCCAUCCGUUUUGCAGGCGGCUGCCAAUGGGACCAUACAGUUCACUCUGGACAGUCUUCUACGAGCCGCUCUGCAGAACUAAACGGA----- .......(((((....((....))........(((((((((((((((.(....(((((....(((......)))....)))))....))))))).)))))))))...)))))----- ( -37.10, z-score = -1.39, R) >droSim1.chr3R 1656930 112 + 27517382 CAGUGUUUCCGGCCCUGCCCAAGCCGCCAUCCGUUUUGCAGGCGGCUGCCAAUGGGACCAUACAGUUCACUCUGGACAGUCUCCUGCGAGCCGCCCUGCAGAACUAAACGGA----- .......((((((...((....)).)))....(((((((((((((((((....(((((....(((......)))....)))))..)).))))).)))))))))).....)))----- ( -43.90, z-score = -2.27, R) >droSec1.super_6 1732123 112 + 4358794 CAGUGUUUCCGGCCCUGCCCAAGCCGCCAUCCGUUUUGCAGGCGGCUGCCAAUGGGACCAUACAGUUCACUCUGGACAGUCUCCUGCGAGCCGCUCUGCAGAACUAAACGGA----- .......((((((...((....)).)))....(((((((((((((((((....(((((....(((......)))....)))))..)).)))))).))))))))).....)))----- ( -43.90, z-score = -2.24, R) >droYak2.chr3R 17576846 112 + 28832112 CAAUGUUUCCGGCCCUGCCCAAGCCGCCAUCCGUUCUGCAGGCGGCUGCCAAUGGGACGAUACAGUUCACCCUGGACAGUCUCCUGCGAGCCGCUCUGCAGAACUAAACGGA----- .......((((((...((....)).)))....(((((((((((((((((....(((((....(((......)))....)))))..)).)))))).))))))))).....)))----- ( -47.10, z-score = -3.36, R) >droEre2.scaffold_4770 1890264 112 + 17746568 CAGUGUUUCCGGCCUUGCCCAAGCCGCCAUCCGUUUUGCAGGCGGCUGCCAAUGGGACCAUACAGUUCACUCUAGACAGUCUCCUGCGAGCCGCUCUGCAGAACUAAACGGA----- .......((((((...((....)).)))....(((((((((((((((((....(((((..((.((....)).))....)))))..)).)))))).))))))))).....)))----- ( -40.20, z-score = -1.76, R) >dp4.chr2 18430739 112 - 30794189 CCAAAUUUCCGGCAUUACCGAAGCCGCCAUCCGUUCUACAGGCAGCUGCCAAUGGCACCAUCCAGCUCACAUUGGAUAGUCUCCUGCGCGCUGCCCUGCAGAACUGAGCGGA----- .........(((.....)))...((((..((.(((((.((((((((.((((..((.((.((((((......)))))).))))..)).)))))).)))).))))).)))))).----- ( -40.20, z-score = -2.37, R) >droWil1.scaffold_181108 3861276 112 - 4707319 CCAAGUUUCCGGCGUUGCCCAAGCCGCCAUCCGUUUUACAGGCAACUGCCAGUGGCACCAUUCAGUUUACAUUGGACAGCCUGCUGCGCGCCGCUUUGCAAAACUAAACGGA----- ..........((((..((....)))))).(((((((....(((....)))((((((....((((((....))))))(((....)))...))))))..........)))))))----- ( -32.60, z-score = 0.09, R) >droVir3.scaffold_13047 13879171 109 + 19223366 CAAAGUUUCCAGCAUUACCAAAGCCACAAUCUGUACUGCAGGCAUCUGCCAACGGAACGAUUCAAUUGACAUUGGACAGCCUGCUUCGUGCCGCACUGCAGAACUGAGC-------- ......................((((...((((((.(((.(((....)))...((.((((..((.(((........)))..))..)))).))))).))))))..)).))-------- ( -25.10, z-score = 0.49, R) >droMoj3.scaffold_6540 7938751 112 - 34148556 CAAAGUUUCCGGCGCUACCGAAACCCCCAUCCGUGCUGCAGGCGUCUGCCAACGGAACAAUCCAAUUCACAUUGGACAGCCUGCUGCGUGCUGCACUGCAGAACUAAGCCAA----- ..........(((.....................((.((((((.((((....))))....((((((....))))))..)))))).))((.((((...)))).))...)))..----- ( -33.30, z-score = -0.98, R) >droGri2.scaffold_15074 7576043 109 - 7742996 CACUAUUUCCGGCGCUGCCCAAGCCGCCAUCCGUUCUGCAGGCAUCUGCGAAUGGAACAAUCCAAUUCACGCUGGACAGCCUGCUGCGUGCCGCUCUGCAGAAUUAAAC-------- ..........((((((.....)).))))....(((((((((((.........((((....))))...(((((.((....))....)))))..)).))))))))).....-------- ( -36.10, z-score = -1.67, R) >droPer1.super_0 8105365 112 + 11822988 CCAAAUUUCCGGCAUUACCGAAGCCGCCAUCCGUUCUGCAGGCAGCUGCCAAUGGAACCAUCCAGCUCACAUUGGAUAGUCUCCUGCGCGCUGCCCUGCAGAACUAAGCGGA----- .........(((.....)))...((((.....(((((((((((((((((....(((((.((((((......)))))).)).))).))).)))).))))))))))...)))).----- ( -46.10, z-score = -4.23, R) >droAna3.scaffold_13340 5219369 117 - 23697760 CAACGUUUCCGGCCCUGCCCAAGCCGCCAUCCGUUUUGCAGGCAGCUGCCAAUGGAACCAUCCAGCUAACGCUGGACAGUCUGCUACGAGCUGCUCUGCAGAACUAAACUAAACGGA ...(((((..(((...((....)).)))....(((((((((((((((......(((....((((((....))))))...)))......)))))).)))))))))......))))).. ( -45.50, z-score = -3.82, R) >consensus CAAUGUUUCCGGCCCUGCCCAAGCCGCCAUCCGUUCUGCAGGCAGCUGCCAAUGGAACCAUACAGUUCACACUGGACAGUCUCCUGCGAGCCGCUCUGCAGAACUAAACGGA_____ .........((((.........))))......((((((((((((...((.............(((......)))..(((....)))...))))).)))))))))............. (-19.31 = -19.56 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:11 2011