| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,572,543 – 1,572,593 |
| Length | 50 |
| Max. P | 0.900035 |
| Location | 1,572,543 – 1,572,593 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 96.33 |
| Shannon entropy | 0.06245 |
| G+C content | 0.29000 |
| Mean single sequence MFE | -2.93 |
| Consensus MFE | -3.11 |
| Energy contribution | -2.92 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.17 |
| Mean z-score | -0.92 |
| Structure conservation index | 1.06 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.900035 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1572543 50 + 27905053 UACACUACUAUUAAACAAAUAAAGAUGGCAACCAGCUGACUAAAUACAAA ......................((.((((.....)))).))......... ( -2.60, z-score = -0.55, R) >droSim1.chr3R 1609354 50 + 27517382 UACACUAUUAUUAAACAAAUAAAGAUGGCAACCAGCUGACUAACUACAAA ......................((.((((.....)))).))......... ( -2.60, z-score = -0.40, R) >droSec1.super_6 1687589 50 + 4358794 UACACUAUUAUUAAACAAAUAAAGAUGGCAACCAGCUGACUAACUACAAA ......................((.((((.....)))).))......... ( -2.60, z-score = -0.40, R) >droYak2.chr3R 17534269 50 + 28832112 UACACUAUUAUUAAACAAAUAAAGAUAGCAACCAGCUGACUAAUUACAAA ......................((.((((.....)))).))......... ( -3.90, z-score = -2.31, R) >consensus UACACUAUUAUUAAACAAAUAAAGAUGGCAACCAGCUGACUAACUACAAA ......................((.((((.....)))).))......... ( -3.11 = -2.92 + -0.19)
| Location | 1,572,543 – 1,572,593 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 96.33 |
| Shannon entropy | 0.06245 |
| G+C content | 0.29000 |
| Mean single sequence MFE | -6.97 |
| Consensus MFE | -7.15 |
| Energy contribution | -6.90 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.19 |
| Mean z-score | -0.80 |
| Structure conservation index | 1.03 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1572543 50 - 27905053 UUUGUAUUUAGUCAGCUGGUUGCCAUCUUUAUUUGUUUAAUAGUAGUGUA ...(((.((((....)))).)))(((..(((((.....)))))..))).. ( -5.10, z-score = 0.09, R) >droSim1.chr3R 1609354 50 - 27517382 UUUGUAGUUAGUCAGCUGGUUGCCAUCUUUAUUUGUUUAAUAAUAGUGUA ...((((..((....))..))))(((..(((((.....)))))..))).. ( -7.40, z-score = -0.99, R) >droSec1.super_6 1687589 50 - 4358794 UUUGUAGUUAGUCAGCUGGUUGCCAUCUUUAUUUGUUUAAUAAUAGUGUA ...((((..((....))..))))(((..(((((.....)))))..))).. ( -7.40, z-score = -0.99, R) >droYak2.chr3R 17534269 50 - 28832112 UUUGUAAUUAGUCAGCUGGUUGCUAUCUUUAUUUGUUUAAUAAUAGUGUA ...((((((((....))))))))(((..(((((.....)))))..))).. ( -8.00, z-score = -1.32, R) >consensus UUUGUAGUUAGUCAGCUGGUUGCCAUCUUUAUUUGUUUAAUAAUAGUGUA ...((((((((....))))))))(((..(((((.....)))))..))).. ( -7.15 = -6.90 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:52:06 2011