Locus 8776

Sequence ID dm3.chr3R
Location 1,531,732 – 1,531,822
Length 90
Max. P 0.553414
window12049

overview

Window 9

Location 1,531,732 – 1,531,822
Length 90
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 87.29
Shannon entropy 0.20235
G+C content 0.46944
Mean single sequence MFE -32.38
Consensus MFE -22.26
Energy contribution -21.70
Covariance contribution -0.56
Combinations/Pair 1.19
Mean z-score -2.03
Structure conservation index 0.69
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.12
SVM RNA-class probability 0.553414
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 1531732 90 + 27905053
AAUUAGUUGUGGUCCACACUAAUGUAUCUACGAGAUAUAUACAUGUG-UGUGUGUGUGAGUUCGCGAACGCAUCUGAUGGACAGCUGCAUC
.....((.((.(((((.....(((((((.....))))))).((.(((-(((...((((....)))).)))))).)).))))).)).))... ( -26.80, z-score =  -0.90, R)
>droYak2.chr3R 17496076 90 + 28832112
AAUUAGAUGUGGUCCACACGGAUGUAUGUAC-AUAUGUAUCUUUGGGAUACAUGUGUGCGUGCGAGAACGCAUCUGACGGACAGCUGCAUC
..(((((((((((((....))))((((((((-(((((((((.....))))))))))))))))).....)))))))))(((....))).... ( -39.70, z-score =  -4.82, R)
>droSec1.super_6 1647390 90 + 4358794
AAUUAGUUGUGGUCCACACUAAUGUAUCUGCGAGAUACAUACAUGUG-CGUGUGUGUGAGUGCGCGAACGCAUCUGACGGACAGCUGCAUC
.....((.((.((((......(((((((.....))))))).((.(((-(((.(((((....))))).)))))).))..)))).)).))... ( -31.50, z-score =  -1.21, R)
>droSim1.chr3R 1566261 90 + 27517382
AAUUAGUUGUGGUCCACACUAAUGUAUCUGCGAGAUACAUACAUGUG-CGUGUGUGUGAGUGCGCGAACGCAUCUGACGGACAGCUGCAUC
.....((.((.((((......(((((((.....))))))).((.(((-(((.(((((....))))).)))))).))..)))).)).))... ( -31.50, z-score =  -1.21, R)
>consensus
AAUUAGUUGUGGUCCACACUAAUGUAUCUACGAGAUACAUACAUGUG_CGUGUGUGUGAGUGCGCGAACGCAUCUGACGGACAGCUGCAUC
...(((((((.((((((((..(((((((.....)))))))((((.....))))))))).(((((....)))))..))).).)))))).... (-22.26 = -21.70 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:58 2011