| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,525,704 – 1,525,804 |
| Length | 100 |
| Max. P | 0.767503 |
| Location | 1,525,704 – 1,525,804 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 74.87 |
| Shannon entropy | 0.37450 |
| G+C content | 0.49390 |
| Mean single sequence MFE | -26.17 |
| Consensus MFE | -15.36 |
| Energy contribution | -15.80 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.767503 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1525704 100 + 27905053 ---UGAACUUCUGCCUCGCCGGCUGAACAGCUCGGCUGGAUUAACAAGAAACUAAUCGAGUGAGGAGCUGGCAACCUUUCAAACAUGCUUUGAGCAUGCCAUC ---....(((((..((((((((((....))).))))..(((((.........))))))))..))))).(((((....((((((.....))))))..))))).. ( -29.90, z-score = -1.46, R) >droAna3.scaffold_13340 5128434 82 - 23697760 UGAUGCUCUUCUGCAUCGUUGCCCGAACAACUCGGUUGGGCCAACAAGAAACUAAUCGAGUG---UGUUGGCAGCUUUUCAAACU------------------ .(((((......)))))((((((..((((((((((((((............)))))))))).---))))))))))..........------------------ ( -31.40, z-score = -4.18, R) >droSec1.super_6 1641674 84 + 4358794 ---UGGUCUUCUGCCUCGCCGGCUGAACAACCCGGCUGGAUUAACAAGAAACUAAUCGAGUGAGGAGCUGGCAACCUUUCAAACAUC---------------- ---..(((..((.((((((((((((.......))))))(((((.........)))))..))))))))..)))...............---------------- ( -23.30, z-score = -1.16, R) >droSim1.chr3R 1560551 84 + 27517382 ---UGGUCUUCUGCCUCGCCGUCUGCACAACUCGGCUGGAUUAACAAGAAACUAAUCGAGUGAGGAGCUGGCAAACAUUCAAACAUC---------------- ---..(((..((.((((((.....))...(((((..(((.((......)).)))..)))))))))))..)))...............---------------- ( -20.10, z-score = -0.61, R) >consensus ___UGGUCUUCUGCCUCGCCGGCUGAACAACUCGGCUGGAUUAACAAGAAACUAAUCGAGUGAGGAGCUGGCAACCUUUCAAACAUC________________ .................(((((((.....(((((..(((............)))..)))))....)))))))............................... (-15.36 = -15.80 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:57 2011