| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,475,838 – 1,475,928 |
| Length | 90 |
| Max. P | 0.957940 |
| Location | 1,475,838 – 1,475,928 |
|---|---|
| Length | 90 |
| Sequences | 14 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 68.11 |
| Shannon entropy | 0.65627 |
| G+C content | 0.63669 |
| Mean single sequence MFE | -40.94 |
| Consensus MFE | -15.62 |
| Energy contribution | -15.76 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.68 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.957940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1475838 90 + 27905053 -----------------GAGCGGCGGCCCCUGUGCCGCCCGCCCAUCGCUUCUUGCAACCGAUCGGCCAGUGCGACGCGGCGCUGGGCGAUCUGCUUAGCGAGUUGC -----------------(.((((((((......)))).)))).).(((((....(((...(((((.(((((((......))))))).))))))))..)))))..... ( -46.40, z-score = -2.21, R) >droSec1.super_6 1590666 90 + 4358794 -----------------GAGCGGCGGCCCCUGUGCCGCCCGCCCAUCGCUUCCUGCAACCGAUCGGCCAGUGCGACGCCGCGCUUGGCGAUCUGCUUAGCGAGUUGC -----------------(.((((((((......)))).)))).).(((((....(((...(((((.((((((((....))))).)))))))))))..)))))..... ( -42.20, z-score = -2.03, R) >droYak2.chr3R 17439987 90 + 28832112 -----------------GAGCAACAGCCCCUGUGCCGCCCGCCCAUCGCUUCUUGCAGCCGAUCGGCCAGUGUGACGCUGCACUGGGCGAUCUGCUUAGCGAGUUGC -----------------..(((((......((.((.....)).))(((((......(((.(((((.(((((((......))))))).))))).))).)))))))))) ( -37.20, z-score = -1.57, R) >droEre2.scaffold_4770 1748395 90 + 17746568 -----------------GAGCGGCGGCCCCUGUGCCGCCCGCACAUCGCUUCUUGCAGCCGAUCGGCCAGUGCGACGCGGCGCUGGGCGAUCUGCUUAGUGAGUUGC -----------------..((((((((......)))).)))).....((..((..((((.(((((.(((((((......))))))).))))).)))..)..))..)) ( -47.40, z-score = -2.23, R) >droAna3.scaffold_13340 1415832 90 + 23697760 -----------------GAGCGGCGGCCCCUGUGCCGCCCGCUCAUCGCUUUCUACAGCCGAUCGGCCAGUGUGACACAGCAUUGGGCGAUCUGCUCAGCGAACUGC -----------------((((((((((......)))).)))))).(((((......(((.(((((.(((((((......))))))).))))).))).)))))..... ( -47.10, z-score = -4.24, R) >dp4.chr2 19569955 100 - 30794189 -------AAUGCUCCGGCAGCAGGAGCACCUGUGCCGCCAGCUCAUCGUUUCCUGCAGCCGAUCAGCCAGUGCGAUGCGGCACUGGGUGAUCUGCUCAGCGAGCUAC -------...(((.(((((.((((....)))))))))..))).....((((.(((.(((.(((((.(((((((......))))))).))))).)))))).))))... ( -49.10, z-score = -2.80, R) >droPer1.super_0 9246166 100 + 11822988 -------AAUGCCCCGGCAGCAGGAGCACCUGUGCCGCCAGCUCAUCGUUUCCUGCAGCCGAUCAGCCAGUGCGAUGCGGCACUGGGUGAUCUGCUCAGCGAGCUAC -------...((..(((((.((((....)))))))))...)).....((((.(((.(((.(((((.(((((((......))))))).))))).)))))).))))... ( -48.00, z-score = -2.64, R) >droWil1.scaffold_181089 11632888 97 + 12369635 -------AAUGCUCC---AGGUGGAGCGCCGAUGCCGCCGGCUCAUCGUUUUCUGCAGCCGAUCAGUCAGUGCGAUGCAGCACUGGGUGACCUGCUCAGUGAAUUGC -------...(((((---....)))))((((.......)))).....((((.(((.(((.(.(((.(((((((......))))))).))).).)))))).))))... ( -39.60, z-score = -1.28, R) >droVir3.scaffold_12855 6238565 96 - 10161210 -----------UUGGGGGGGCCGGACAACAUUUGCCACCCGCUCAUCGCUUCCUACAGCCGAUCAGCCAGUGCGAUACCGCACUGGGUGAUCUGCUAAGCGAGCUGC -----------.((((.(((..((.((.....)))).))).))))((((((.....(((.(((((.((((((((....)))))))).))))).)))))))))..... ( -46.70, z-score = -4.05, R) >droMoj3.scaffold_6540 25917751 96 - 34148556 -----------UAGGGGGGGCCGGACAACAUUUGCCACCCGCUCAUCGCUUCCUGCAGCCGAUCAGCCAGUGCGACACGGCACUGGGUGAUCUGCUGAGCGAAUUGC -----------..(((.(((..((.((.....)))).))).))).(((((.....((((.(((((.(((((((......))))))).))))).)))))))))..... ( -45.80, z-score = -3.30, R) >droGri2.scaffold_14906 7625523 107 - 14172833 UCCUGGGGGUGCCGGGGGGCAACAGCAGCAUUUGCCGCCCGCUCAUCGCUUCCUUCAGCCGAUCAGCCAGUGCGACACGGCACUGGGUGAUCUGCUGAGCGAGCUGC .......((((.((((.(((((.........))))).))))..))))((((.((.((((.(((((.(((((((......))))))).))))).)))))).))))... ( -54.20, z-score = -2.32, R) >anoGam1.chr2R 9480222 90 + 62725911 -----------------CGGCCGCACCACCCGCCCCGCCAGCCAACCGGUUCCUGCAGCCGCUGCACAAGUGUGACAUGGCGCUGACCGAUCUGCUCGGCGAGCUGC -----------------((((.((.......))..(((((((....(((((...((.((((.(((((....))).)))))))).)))))....))).)))).)))). ( -32.20, z-score = 0.29, R) >apiMel3.Group9 9717232 93 - 10282195 --------------GACCUGGUGGACAACCAUUACCAGCAGCAAAUCGUUUUUUACAACCUGUACAUAAAUGUGAUAUGAGUUUAACAGAUCUUUUGGGAGAACUUC --------------...(((.(((..........))).)))((((..((((.(((.(((..((((((....))).)))..)))))).))))..)))).......... ( -12.70, z-score = 1.47, R) >triCas2.ChLG7 12794486 90 - 17478683 -----------------CCCCGCAAGCCCCCAUCCCGCCCGCCAGUCGGUUCCUCCAACCCAUCUCAAAGUGCGAUAUGAGUCUGACUGAUUUGAUCGGGGAGCUGC -----------------....(((.(((((((((..(....)(((((((...(((....((((......))).)....))).)))))))....))).)))).))))) ( -24.50, z-score = -0.62, R) >consensus _________________GAGCGGCAGCACCUGUGCCGCCCGCUCAUCGCUUCCUGCAGCCGAUCAGCCAGUGCGACACGGCACUGGGUGAUCUGCUCAGCGAGCUGC .............................................(((((......(((.(((((.(.(((((......))))).).))))).))).)))))..... (-15.62 = -15.76 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:52 2011