| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,456,673 – 1,456,763 |
| Length | 90 |
| Max. P | 0.577841 |
| Location | 1,456,673 – 1,456,763 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 83.11 |
| Shannon entropy | 0.30051 |
| G+C content | 0.61556 |
| Mean single sequence MFE | -35.22 |
| Consensus MFE | -23.46 |
| Energy contribution | -24.06 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.577841 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1456673 90 + 27905053 ACGAGGAAUCCGGAAUGGAGGAUCCUCAAAAUCGGGGUCGCAACAGCGCCAUCCUCUCUAGCAGCGAAAGCGACCCGGUUCCGGAACCCC ....((..((((((((.(((....))).......(((((((....((((...........)).))....))))))).))))))))..)). ( -35.40, z-score = -2.00, R) >droEre2.scaffold_4770 1728078 90 + 17746568 AAGAGGAAUCCGCAGCGGAGGAUCUUCCCGGUCAGGGUCGAAACUGCGUCGUCCUCUCUAGCAGCGGAAGCGAUACGCUUCCGGAUCCCU ...(((.((((((.((((((((((.....)))).(((.(((.......))).))))))).)).))(((((((...))))))))))).))) ( -35.90, z-score = -1.16, R) >droYak2.chr3R 17421067 90 + 28832112 AAGAGGAGUCCGGAGCAGAGCAUUUUCCCAGUCAGGGUCGGAAUGGCGUCAUCCGCUCUAGCAGCGAUAGCGAUGCGAUUCCGGAACCCU ...(((..(((((((((((((.....(((.....)))..(((.((....)))))))))).(((.((....)).)))).)))))))..))) ( -33.40, z-score = -1.54, R) >droSec1.super_6 1571435 90 + 4358794 ACGAGGAACCCGGAGCAGAGGAUCCUGCCACUCAGGGUCGCAACGGCGCCAUCCUCUCUAGCAGCGAAAGCGACACGGUUCCGGAACCCC ....((...((((((((((((((.(((.....)))((.(((....))))))))))))...(..((....))..)...)))))))...)). ( -34.70, z-score = -1.57, R) >droSim1.chr3R 1490967 90 + 27517382 ACGAGGAACCCGGAGCAGAGGAUCCUGCCACUCAGGGCCGCAACGGCGCCAUCCUCUCUAGCAGCGAAAGCGACACGGUUCCGGAACCCC ....((...((((((((((((((((((.....))))((((...))))...)))))))...(..((....))..)...)))))))...)). ( -36.70, z-score = -2.17, R) >consensus ACGAGGAAUCCGGAGCAGAGGAUCCUCCCACUCAGGGUCGCAACGGCGCCAUCCUCUCUAGCAGCGAAAGCGACACGGUUCCGGAACCCC ....((..((((((((((((((((((.......)))(.(((....))).))))))))......((....))......))))))))..)). (-23.46 = -24.06 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:51 2011