| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,379,604 – 6,379,672 |
| Length | 68 |
| Max. P | 0.654206 |
| Location | 6,379,604 – 6,379,672 |
|---|---|
| Length | 68 |
| Sequences | 7 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 73.92 |
| Shannon entropy | 0.45454 |
| G+C content | 0.45965 |
| Mean single sequence MFE | -11.66 |
| Consensus MFE | -5.13 |
| Energy contribution | -5.26 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.654206 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6379604 68 + 23011544 ------ACUCCUUUGCUCGAUUUCUAAACAGAUAUUUUCGGUUA--CCCAGCCGCAUUGUCUUCACUUAUCAGCCA ------........(((.(((........(((((....(((((.--...)))))...)))))......)))))).. ( -11.24, z-score = -2.25, R) >droPer1.super_5 433711 68 - 6813705 --------UCUCCGAGUCAAUAUCUUAACUGCGCUUUUCCCUUUUUCCCGCCGGAAUUUUCCUCACUUUCCAGGCA --------.........................................(((((((...........)))).))). ( -8.40, z-score = -0.33, R) >dp4.chr4_group5 462258 68 - 2436548 --------UCUCCGAGUCAAUAUCUUAACUGCGCUUUUCCCUUUUUCCCGCCGGCAUUUUCCUCACUUUUCAGGCA --------.........................................(((....................))). ( -3.65, z-score = 1.79, R) >droSim1.chr2L 6183755 74 + 22036055 GUCCUCCGUCCUCCGCUCGAUUCCUAAACAGAUAUUUUCGGUUU--CCCAGCCGAAUUGUCUUCACUUAUCAGCCA ..............(((.(((........(((((..((((((..--....)))))).)))))......)))))).. ( -14.74, z-score = -3.37, R) >droSec1.super_5 4447433 74 + 5866729 GUCCUCCGUCCUCCGCUCGAUUCCUAAACAGAUAUUUUCGGUUU--CCCAGCCGAAUUGUCUUCACUUAUCAGCCA ..............(((.(((........(((((..((((((..--....)))))).)))))......)))))).. ( -14.74, z-score = -3.37, R) >droYak2.chr2L 15799200 65 - 22324452 ---------GUCCUGCUCGAUUUCUAAACAGAUAUUUUCGGUUU--CCCAGCCGAAUUGUCUUCACUUAUCAGCCA ---------.....(((.(((........(((((..((((((..--....)))))).)))))......)))))).. ( -14.44, z-score = -3.27, R) >droEre2.scaffold_4929 15305479 65 + 26641161 ---------GUCCUGCUCGAUUUCUAAGCAGAUAUUUUCGGUUU--CCCAGCCGAAUUGUCUUCACUUAUCAGCCA ---------.....(((.(((........(((((..((((((..--....)))))).)))))......)))))).. ( -14.44, z-score = -2.70, R) >consensus ________UCUCCUGCUCGAUUUCUAAACAGAUAUUUUCGGUUU__CCCAGCCGAAUUGUCUUCACUUAUCAGCCA ..............................(((...(((((((......)))))))..)))............... ( -5.13 = -5.26 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:10 2011