| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,451,705 – 1,451,810 |
| Length | 105 |
| Max. P | 0.970988 |
| Location | 1,451,705 – 1,451,810 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 70.13 |
| Shannon entropy | 0.39116 |
| G+C content | 0.37069 |
| Mean single sequence MFE | -20.10 |
| Consensus MFE | -11.99 |
| Energy contribution | -12.77 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.84 |
| SVM RNA-class probability | 0.970988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1451705 105 - 27905053 UAAGCAUAUCAAGAUUCAAAACAUAAAAGAAUAGGACAAGGUGAAGUCAUUUGAACUGCAAUAAGAAAAAGUCCAUCCACGAUGGCUAAUCACUACUGUGUGCAA ...(((((((...((((...........))))..))...((((((((((((((.(((............))).)).....)))))))..)))))....))))).. ( -17.80, z-score = -0.48, R) >droSec1.super_6 1566660 88 - 4358794 -----------------UAAACAUAAAACAAUAGUCCAAAGUGAAUUGCUUUGAACUGCAAUAAACAAUAGACCAUCCACGAUGGCUAACACCUUUUGUGUGUAG -----------------...((((((((...((((.((((((.....)))))).))))..........(((.(((((...)))))))).....)))))))).... ( -20.30, z-score = -3.29, R) >droSim1.chr3R 1486233 81 - 27517382 -----------------UAAACAUAAAACAAUAGGCCAAAGUAAAUUGCUUUGGACUG-------CAAUAGACCAUCCACGAUGGCUAACACCUACUGUGUGCAG -----------------..................(((((((.....))))))).(((-------(..(((.(((((...))))))))((((.....)))))))) ( -22.20, z-score = -3.38, R) >consensus _________________UAAACAUAAAACAAUAGGCCAAAGUGAAUUGCUUUGAACUGCAAUAA_CAAUAGACCAUCCACGAUGGCUAACACCUACUGUGUGCAG ....................(((((......(((..((((((.....))))))..)))..........(((.(((((...))))))))........))))).... (-11.99 = -12.77 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:50 2011