| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,445,841 – 1,445,936 |
| Length | 95 |
| Max. P | 0.959666 |
| Location | 1,445,841 – 1,445,936 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 71.35 |
| Shannon entropy | 0.47732 |
| G+C content | 0.61650 |
| Mean single sequence MFE | -34.44 |
| Consensus MFE | -21.46 |
| Energy contribution | -22.14 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1445841 95 + 27905053 CACGCUGAUGGUGGCGAUGGCGACGGUUGGCGACUUGACGACUUGGGGAUGGAGAUGGAGCUGGAGCUCAAGCGCGGCCCGGCUUAUUGUAGCCA ..(((..((.((.((....)).)).))..))).............(((.(.(.(...((((....))))...).).))))((((......)))). ( -34.40, z-score = -0.93, R) >droSim1.chr3R 1480381 95 + 27517382 CACGCCGAUGGUGGCGAUGGCGACGGUUGGCGACUUGACGACUUGGGGCAGUAGAUGGAGCUGGAGCUCAAGCGCGGCCCGGCUUAUUGUAGCCA ..(((((((.((.((....)).)).))))))).............((((.((.(...((((....))))...))).))))((((......)))). ( -40.20, z-score = -1.79, R) >droSec1.super_6 1560895 75 + 4358794 CACGCCGAUGGUGUCGAUGGCGACGGUUGGCGACUUG--------------------GGGCUGGAGCUAAAGCGCGGCCCGGCUUAUUGUAGCCA ..(((((((..(((((....)))))))))))).....--------------------((((((..((....)).))))))((((......)))). ( -35.20, z-score = -2.36, R) >droYak2.chr3R 17410651 79 + 28832112 UAUGCCAAUGGUCGUC-UGACUUGGGGCAGUGGAUGGA---------------GCUGGAGAUGGAGAUGGAGCUCGGUCCGGCUUAUUGUAGCCA ..((((...((((...-.))))...))))..((((.((---------------(((..(........)..))))).))))((((......)))). ( -30.70, z-score = -2.13, R) >droEre2.scaffold_4770 1717174 79 + 17746568 CACGCUGAUGGUGGCCACGGCGACGGUUGACGAUGGA----------------GAUGGAGCUGGAGCUGGAGCUCGGCCCGGCUUAUUGUAGCCA ..(((((.(((...))))))))..(((((.(((((.(----------------(.(((.((((.(((....)))))))))).)))))))))))). ( -31.70, z-score = -1.61, R) >consensus CACGCCGAUGGUGGCGAUGGCGACGGUUGGCGACUUGA_______________GAUGGAGCUGGAGCUCAAGCGCGGCCCGGCUUAUUGUAGCCA ..(((((((.((.((....)).)).))))))).........................(((((((.(((.......)))))))))).......... (-21.46 = -22.14 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:48 2011