Locus 8766

Sequence ID	dm3.chr3R
Location	1,438,158 – 1,438,249
Length	91
Max. P	0.868857

overview

Window 7

Location	1,438,158 – 1,438,249
Length	91
Sequences	9
Columns	103
Reading direction	forward
Mean pairwise identity	74.38
Shannon entropy	0.48646
G+C content	0.44411
Mean single sequence MFE	-24.99
Consensus MFE	-13.75
Energy contribution	-13.23
Covariance contribution	-0.52
Combinations/Pair	1.56
Mean z-score	-1.61
Structure conservation index	0.55
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.99
SVM RNA-class probability	0.868857
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 1438158 91 + 27905053
UUUCCGCGCCGAGU-CGUCCCUAAAUAAAUGGCAUAUAUACCGCUGUGCGUGUGUGC--AUAUGUAUAUGUGC-CUCGUCUGUAUGCAGCGUGGU--------
...((((((.....-...............(((((((((((...((((((....)))--))).))))))))))-)..((......)).)))))).-------- ( -29.30, z-score =  -1.54, R)
>droSim1.chr3R 1473525 91 + 27517382
UUUCCGCGCCGAGU-CGUCCCUAAAUAAAUGGCAUAUAUACCGCUGUGCGUGUGUAC--AUAUGUAUAUGUGC-CUCGUCUGUAUGCAGCGUGGU--------
...((((((.....-...............(((((((((((...(((((....))))--)...))))))))))-)..((......)).)))))).-------- ( -29.20, z-score =  -1.79, R)
>droSec1.super_6 1553398 91 + 4358794
UUUCCGCGCCGAGU-CGUCCCUAAAUAAAUGGCAUAUAUACCGCUGUGCGUUUGUAC--AUAUGUAUAUGUGC-CUCGUCUGUAUGCAGCGUGGU--------
...((((((.....-...............(((((((((((...(((((....))))--)...))))))))))-)..((......)).)))))).-------- ( -29.20, z-score =  -2.27, R)
>droYak2.chr3R 17403580 93 + 28832112
UUUCCGCGCCGAGU-CGUACCUAAAUAAAUGGCAUAUAUACCGCUGUGCGUGUAUAUAUGUAUGUAUAUGUGC-CUCGUCUGUAUGCAGCGUGGU--------
...((((((((((.-.((((.((.(((....(((((((((((((...))).)))))))))).))).)).))))-))))..((....)))))))).-------- ( -30.80, z-score =  -1.85, R)
>droEre2.scaffold_4770 1709244 91 + 17746568
UUUCCGCGCCGAGU-UGUCCCUAAAUAAAUGGCAUAUAUACCGCUGUAGGUGUGUAC--AUAUGUAUAUGUGC-CUCGUCUGUAUGCAGCGUGGU--------
...(((((((((.(-(((......))))..(((((((((((...((((......)))--)...))))))))))-))))..((....)))))))).-------- ( -26.40, z-score =  -0.98, R)
>droAna3.scaffold_13340 5072007 75 - 23697760
UUUCCGCGCCGUAU-CGUUCCUAAAUAAAUGAUAUAGGUAU------------------AUAUAAGUAUAUGC-CUCGUCUGUAUGCAGCGUGCU--------
.....((((.((((-((((........))))))))((((((------------------(((....)))))))-)).(.(((....)))))))).-------- ( -20.80, z-score =  -2.77, R)
>dp4.chr2 17303856 75 + 30794189
UUUCCGCGCCGUGU-CGUCCCUAAAUAUAUUGCAUAUAUAU------------------GUAUGUGUAUAUGC-UUCGUCUGUAUGCAGCGUGGU--------
...((((((.((((-((..(...........((((((((((------------------....))))))))))-...)..)).)))).)))))).-------- ( -20.34, z-score =  -1.74, R)
>droPer1.super_0 11149039 75 + 11822988
UUUCCGCGCCGUGU-CGUCCCUAAAUAUAUUGCAUAUAUAU------------------GUAUGUGUAUAUGC-UUCGUCUGUAUGCAGCGUGGU--------
...((((((.((((-((..(...........((((((((((------------------....))))))))))-...)..)).)))).)))))).-------- ( -20.34, z-score =  -1.74, R)
>droGri2.scaffold_15074 4882080 100 + 7742996
UUUCCGCGCCGUCUUCGUCCCUAAAUAUAUUGCGUAUAUAUAUACA---AUAUACAUAUAUAUGUAUGUUCGCACACACACACGCGCGCUGUAUUUGUGUAUU
....(((((((....)).............(((((((....))))(---((((((((....))))))))).))).........)))))............... ( -18.50, z-score =   0.20, R)
>consensus
UUUCCGCGCCGAGU_CGUCCCUAAAUAAAUGGCAUAUAUACCGCUGU__GUGUGUAC__AUAUGUAUAUGUGC_CUCGUCUGUAUGCAGCGUGGU________
...((((((......................((((((((((......................)))))))))).......((....))))))))......... (-13.75 = -13.23 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:47 2011