| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,422,083 – 1,422,202 |
| Length | 119 |
| Max. P | 0.835565 |
| Location | 1,422,083 – 1,422,202 |
|---|---|
| Length | 119 |
| Sequences | 10 |
| Columns | 123 |
| Reading direction | reverse |
| Mean pairwise identity | 72.46 |
| Shannon entropy | 0.58363 |
| G+C content | 0.39374 |
| Mean single sequence MFE | -26.16 |
| Consensus MFE | -19.18 |
| Energy contribution | -18.08 |
| Covariance contribution | -1.10 |
| Combinations/Pair | 1.35 |
| Mean z-score | -0.52 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835565 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1422083 119 - 27905053 --UUCCCAUUAUUAGGAACCAGUUUUAAAGGGUUCAUGUACAGU-AUGCAAAAGCGAAAGAAUGAUUGGGUGCCCAUAUAACCCAAUGCCGUGGUUAAUU-UGGCCAAUAAUCGUUUGGACAG --.(((.........(((((..........))))).((((....-.)))).((((((.......(((((((.........)))))))....(((((....-.)))))....)))))))))... ( -25.40, z-score = 0.46, R) >droSim1.chrU 11235002 119 - 15797150 --UUCCCAUUAUUAGGAACCAGUUUUAAAGGGUUCAUGUACAGU-AUGCCAGAGCGAAAGAAUGAUUGGGUGCCCAUAUAACCCAAUGCCGUGGUUAAUU-UGGCCAAUAAUCGUUUGGACAG --.............(((((..........))))).........-.(((((((.(((.......(((((((.........)))))))....(((((....-.)))))....)))))))).)). ( -26.50, z-score = 0.30, R) >droSec1.super_6 1537148 119 - 4358794 --UUCCCAUUAUUAGGAACCAGUUUUAAAGGGUUCAUGUACAGU-AUGCCAGAGCGAAAGAAUGAUUGGGUGCCCAUAUAACCCAAUGCCGUGGUUAAUU-UGGCCAAUAAUCGUUUGGACAG --.............(((((..........))))).........-.(((((((.(((.......(((((((.........)))))))....(((((....-.)))))....)))))))).)). ( -26.50, z-score = 0.30, R) >droYak2.chr3R 17386781 120 - 28832112 --UUUCCAAUAUUGGGAACCAGUUUUAAAGGGUUUAUGUACAGU-AUGCCAGAGCAAAAGAAUGAUUGGGUGUCCAUAUAACCCAUUCUCGUGGUUAAUUGUGGCCAAUAAUCGUUUGGACAG --..((((((((((((((((..........)))))...((((((-..(((((((((......))..(((((.........)))))..))).))))..)))))).)))))).....)))))... ( -28.70, z-score = -0.45, R) >droEre2.scaffold_4770 1692567 120 - 17746568 --UUUCCAAUAUUUGAAACCAGUUUUAAAGGGUUCAUGUACAGU-AUGCCAGAGCAAAAGAAUGAUUGGGUGUCCAUAUAACCCACUGCCGUGGUUAAUUUUGGCCAAUAAUCAUUUGGACAG --..(((....(((((((....)))))))..((((..(((....-.)))..))))....(((((((((..((.(((..(((((.((....)))))))....))).)).))))))))))))... ( -25.10, z-score = 0.28, R) >droAna3.scaffold_13088 66127 115 + 569066 -------AUCCUUUGGGCGCAAUUUUGAAGGGUUCAUUUACAGU-AUGCCAGAGCAUUUGGGUGAUAGGGUGUUCAUGUAGCCUACUUCCAUGGCUAUCUUUGGCCAAUCAUCACUUGGACAG -------..((((..((......))..))))(((((....(((.-((((....)))))))((((((.(..((..((.((((((.........))))))...))..))..)))))))))))).. ( -32.10, z-score = -0.39, R) >dp4.chr2 7422009 119 + 30794189 CCACAAAACCCAUUGUGCACAAUUCCAAGAGGUU-AAUUUCGGUCAUGCCAGAGCAAAAGAAUGAUUGGGUGUCCAUAUAACUUUUC---AUAGUUACAUUUGGCCAAUAAUCAUUUGGACAG .(((((......)))))......((((((.((((-(.....((((.(((....)))...(((((..(((....)))..(((((....---..))))))))))))))..))))).))))))... ( -24.30, z-score = -0.28, R) >droPer1.super_3 1232397 120 + 7375914 CUACAAAUCUCAUUGAGCACAAUUCCAGGAGGUUAAAUAUCGGUAAUGCCAGAGCAAAUGAAUGAUUGGGUGUCCAUAUAACUUUUC---AUAGUUACAUUUGGCCAAUAAUCAUUUGGACAG .....((((((...(((.....)))...)))))).......((.....))....(((((((...(((((....(((..(((((....---..)))))....))))))))..)))))))..... ( -23.10, z-score = 0.07, R) >droVir3.scaffold_13047 11659633 105 + 19223366 --------------GUACAAAGUCUUAAAAAGCUCAUGUAAAAU-AUGCAAGAGCAAAAGAAUGAUUGGGUGUCCAUAUAACUAAAC---AUAGUUACAUUUGGCCAAUAAUCGUUCGGACAA --------------.......((((......((((.((((....-.)))).))))....(((((((((..((.(((..((((((...---.))))))....))).)).))))))))))))).. ( -30.30, z-score = -5.07, R) >droGri2.scaffold_14830 2850819 100 + 6267026 --------------------AACUCCAAAAAGGUCAGAGGAAAU-AUGCCAGAGCAAAAGAAUGAUUGGGUGUCCAUACAACUUGAU--AAUAGUUACAUUUGGCCAAUAAUCGUUCGGACAA --------------------............(((.........-.(((....)))...(((((((((..((.(((...((((....--...)))).....))).)).))))))))).))).. ( -19.60, z-score = -0.42, R) >consensus __UU_CCAUUAUUUGGAACCAGUUUUAAAGGGUUCAUGUACAGU_AUGCCAGAGCAAAAGAAUGAUUGGGUGUCCAUAUAACCCAAU_CCAUGGUUAAUUUUGGCCAAUAAUCGUUUGGACAG ...............................((((...........(((....)))...(((((((((..((.(((..(((((.........)))))....))).)).))))))))))))).. (-19.18 = -18.08 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:40 2011