| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,379,179 – 6,379,290 |
| Length | 111 |
| Max. P | 0.559201 |
| Location | 6,379,179 – 6,379,290 |
|---|---|
| Length | 111 |
| Sequences | 9 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 75.08 |
| Shannon entropy | 0.49736 |
| G+C content | 0.58954 |
| Mean single sequence MFE | -42.72 |
| Consensus MFE | -22.66 |
| Energy contribution | -22.64 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559201 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6379179 111 + 23011544 CGUGUUGAUGUAGCCGUCCAGUGCGAUUUCCGCCGCGGUUGUUGUCGUCCGCCGCAGCGUUGUGGUUGUGGGCGGCGGUUGUGUUGUCGGCGGACUCGACACUACACGUAG----- .(((((((.((.((((..(((..((((..(((((((((.((....)).))))((((((......)))))))))))..))))..))).))))..))))))))).........----- ( -52.80, z-score = -2.84, R) >droSim1.chr2L 6183332 111 + 22036055 CGUGUUGAUGUAGCCGUCCAGUGCGAUUUCCGCCGCGGUUGUUGUCGUCCGCCGCAGCGUUGUGGUUGUGGGCGGCGGUUGUGUUGUCGGCGGACUCGACACUACACGGAG----- .(((((((.((.((((..(((..((((..(((((((((.((....)).))))((((((......)))))))))))..))))..))).))))..))))))))).........----- ( -52.80, z-score = -2.50, R) >droSec1.super_5 4447011 111 + 5866729 CGUGUUGAUGUAGCCGUCCAGUGCGAUUUCCGCCGCGGUUGUUGUCGUCCGCCGCAGCGUUGUGGUUGUGGGCGGCGGUUGUGUUGUCGGCGGACUCGACACUACACGGAG----- .(((((((.((.((((..(((..((((..(((((((((.((....)).))))((((((......)))))))))))..))))..))).))))..))))))))).........----- ( -52.80, z-score = -2.50, R) >droYak2.chr2L 15798712 111 - 22324452 CGUGUUGAUGUAGCCGUCCAGUGCGAUUUCCGCCGCGGUUGUUGUCGUCCGCCGCAGCGUUGUGGUUGUGGGUGGCGGUUGUGUUGUCGGCGGACUGGACACUACACGGAG----- (((((((.(.(((((((((((..((((..(((((((((.((....)).))))((((((......)))))))))))..))))..)))..))))).))).)))..)))))...----- ( -48.00, z-score = -1.49, R) >droEre2.scaffold_4929 15305092 111 + 26641161 CGUGUUGAUGUAGCCGUCCAGCGCGAUUUCCGCCGCGGUUGUUGUUGUCCGCCGCAGCGUUGUGGUUGUGGGUGGCGGUUGUGUGGUCGGCGGACUGGACACUACACGGAG----- .(((((.(.((.((((.(((.((((((..(((((((((..........))))((((((......)))))))))))..))))))))).))))..))).))))).........----- ( -50.20, z-score = -1.74, R) >dp4.chr4_group5 461976 103 - 2436548 ---GGUGUUGUAGCCAUCCAAAGUGUUUGCCAUCGUUGUGGUUGUCGUGCGCCGCAGUGUUGUGGUUGUGGGCGGGGGCUGAGUGGUGGGUGGACUCGACACUGCA---------- ---(((((((.(((((((((.(((.((((((..(((((((((........)))))))))...........)))))).)))......))))))).)))))))))...---------- ( -38.72, z-score = -0.77, R) >droPer1.super_5 433430 103 - 6813705 ---GGUGUUGUAGCCAUCCAAAGUGUUUGCCAUCGUUGUGGUUGUCGUGCGCCGCAGUGUUGUGGUUGUGGGCGGGGGCUGUGUGGUGGGUGGACUCGACACUGCA---------- ---(((((((.(((((((((..(..(..(((..((((...((......))(((((......)))))....))))..))).)..)..))))))).)))))))))...---------- ( -39.40, z-score = -0.93, R) >droVir3.scaffold_12963 17482716 110 - 20206255 ------UGUGUUGCCAUCAUAGGGAAAGUUAAUCGUUGUUGUUGUUGUUGUCGGCAAUGUGGUUGUUGUGGGCGGCGGUUGUGUGGUUGGCGGACUGGACACUGUAAGCAAGUAAC ------...(((((....((((.((.......)).))))..(((((((((((.(((((......))))).))))))(((.((.(((((....))))).)))))...)))))))))) ( -25.20, z-score = 1.07, R) >droMoj3.scaffold_6500 19393810 107 - 32352404 ------CACAUUGCUAUCAAAGGGUAAGUU---CAUUGUUGUUGUCGUUGUGGGCAAAGUUGUUGUUGUGGGCGGCGGUUGGGUGGUUGGCGGACUUGACACUGUUGGGAAGUACA ------.....((((.((((.((.((((((---(...........((((((..((((........))))..))))))((..(....)..)))))))))...)).))))..)))).. ( -24.60, z-score = 0.80, R) >consensus CGUGUUGAUGUAGCCGUCCAGUGCGAUUUCCGCCGCGGUUGUUGUCGUCCGCCGCAGCGUUGUGGUUGUGGGCGGCGGUUGUGUGGUCGGCGGACUCGACACUACACGGAG_____ ........(((((.(((.....)))...((((((((..(.(((((((((((((((......)))))...))))))))))...)..).))))))).......))))).......... (-22.66 = -22.64 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:09 2011