| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,419,288 – 1,419,411 |
| Length | 123 |
| Max. P | 0.980765 |
| Location | 1,419,288 – 1,419,395 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 97.20 |
| Shannon entropy | 0.04956 |
| G+C content | 0.35701 |
| Mean single sequence MFE | -20.96 |
| Consensus MFE | -20.64 |
| Energy contribution | -20.44 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.06 |
| SVM RNA-class probability | 0.980765 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1419288 107 + 27905053 AACACUCAAGAACAUUUCGGUCCUUGUGUACGCAACAGUUUUAAUAGUAACCACACUAAACGCGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAAUACUUAU ...((.((((.((......)).)))).))..(((((((......((((......)))).....(((((((((((....))))))))))))))).))).......... ( -21.10, z-score = -2.28, R) >droEre2.scaffold_4770 1689378 107 + 17746568 AACACUCAAGAACAUUUCGGUCCUUGUGUACGCAACAGUUUUAAUAGCAACCACACUAAACACGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAAUACUUAC ...((.((((.((......)).)))).))..(((...(((.....)))...........(((.(((((((((((....))))))))))).))).))).......... ( -19.80, z-score = -2.25, R) >droYak2.chr3R 17383204 107 + 28832112 AACACUCAAGAAUAUUUCGGUCCUUGUGUACGCAACAGUUAUAAUAGUAACCACACUAAACACGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAAUACUUAC ...((.((((.((......)).)))).))..(((...(((((....)))))........(((.(((((((((((....))))))))))).))).))).......... ( -19.70, z-score = -1.83, R) >droSec1.super_6 1534175 107 + 4358794 AACACUCAAGAGCAUUUCGGUCCUUGUGUACGCAACAGUUUUAAUAGUAACCACACUAAACACGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAAUACUUAC ...((.((((..(......)..)))).))..(((((((......((((......)))).....(((((((((((....))))))))))))))).))).......... ( -22.00, z-score = -2.49, R) >droSim1.chr3R 1455731 107 + 27517382 AACACUCAAGAGCAUUUCGGUCCUUGUGUACGCAACAGUUUUAAUAGUAACCACACUAAACACGCAUAUAUAUUAUCCGAUAUAUAUGUCUGUAUGCCAAUACUUAC ...((.((((..(......)..)))).))..(((((((......((((......)))).....(((((((((((....))))))))))))))).))).......... ( -22.20, z-score = -2.34, R) >consensus AACACUCAAGAACAUUUCGGUCCUUGUGUACGCAACAGUUUUAAUAGUAACCACACUAAACACGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAAUACUUAC ...((.((((.((......)).)))).))..(((((((......((((......)))).....(((((((((((....))))))))))))))).))).......... (-20.64 = -20.44 + -0.20)
| Location | 1,419,320 – 1,419,411 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 97.80 |
| Shannon entropy | 0.03967 |
| G+C content | 0.30769 |
| Mean single sequence MFE | -17.40 |
| Consensus MFE | -17.14 |
| Energy contribution | -17.14 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.77 |
| SVM RNA-class probability | 0.966994 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1419320 91 + 27905053 CAACAGUUUUAAUAGUAACCACACUAAACGCGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAAUACUUAUUAUAUAGUUUAGAGGA ..................((...((((((..(((((((((((....)))))))))))..((((....))))..........)))))).)). ( -17.10, z-score = -1.68, R) >droEre2.scaffold_4770 1689410 91 + 17746568 CAACAGUUUUAAUAGCAACCACACUAAACACGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAAUACUUACUAUAUAGUUUAGAGGA .....(((.....)))..((...((((((..(((((((((((....)))))))))))..((((....))))..........)))))).)). ( -17.30, z-score = -2.27, R) >droYak2.chr3R 17383236 91 + 28832112 CAACAGUUAUAAUAGUAACCACACUAAACACGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAAUACUUACUAUAUAGUUUAGAGGA .....(((((....)))))....((((((..(((((((((((....)))))))))))..((((....))))..........)))))).... ( -18.20, z-score = -2.07, R) >droSec1.super_6 1534207 91 + 4358794 CAACAGUUUUAAUAGUAACCACACUAAACACGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAAUACUUACUAUAUAGUUUAGAGGA ..................((...((((((..(((((((((((....)))))))))))..((((....))))..........)))))).)). ( -17.10, z-score = -1.87, R) >droSim1.chr3R 1455763 91 + 27517382 CAACAGUUUUAAUAGUAACCACACUAAACACGCAUAUAUAUUAUCCGAUAUAUAUGUCUGUAUGCCAAUACUUACUAUAUAGUUUAGAGGA ..................((...((((((..(((((((((((....)))))))))))..((((....))))..........)))))).)). ( -17.30, z-score = -1.94, R) >consensus CAACAGUUUUAAUAGUAACCACACUAAACACGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAAUACUUACUAUAUAGUUUAGAGGA ..................((...((((((..(((((((((((....)))))))))))..((((....))))..........)))))).)). (-17.14 = -17.14 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:36 2011