| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,418,058 – 1,418,153 |
| Length | 95 |
| Max. P | 0.929897 |
| Location | 1,418,058 – 1,418,153 |
|---|---|
| Length | 95 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 69.33 |
| Shannon entropy | 0.62867 |
| G+C content | 0.56327 |
| Mean single sequence MFE | -40.79 |
| Consensus MFE | -11.32 |
| Energy contribution | -11.09 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.929897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1418058 95 - 27905053 GUCGUGUGACAGAGAG-----UACGAGUGUGGGGUGCAG--------GGCUAGUCGUCUCGCUCCAACACAUUGC-UCCAAUGCGGGGG-CCGUGUCACAUGA-CCAGCAC (((((((((((.....-----.....((((((((((..(--------(((.....)))))))))).))))...((-(((......))))-)..))))))))))-)...... ( -40.40, z-score = -1.81, R) >droSim1.chr3R 1454503 95 - 27517382 GUCGUGUGACAGAGAG-----UGCGAGUGUGGGGUGCAG--------GGCUAGUCGUCUCGCUCCAACACAUUGC-CCCAAUGCGGGGG-CCGUGUCACAUGA-CCAGCAC (((((((((((.....-----.....((((((((((..(--------(((.....)))))))))).))))...((-(((......))))-)..))))))))))-)...... ( -43.40, z-score = -2.11, R) >droSec1.super_6 1532942 95 - 4358794 GUCGUGUGACAGAGAG-----UGCGAGUGUGGGGUGCAG--------GGCUAGUCGUCUCGCUCGAACACAUUGC-CGUAAUGCGGGGG-CCGUGUCACAUGA-CCAGUAC (((((((((((..(.(-----(.(..((((.(((((..(--------(((.....)))))))))..))))....(-((.....)))).)-)).))))))))))-)...... ( -36.50, z-score = -0.86, R) >droYak2.chr3R 17381991 95 - 28832112 GUCGUGUGACAGAGAG-----UGCGAGUGUGGGGUGCAG--------GGCUAGUCGUCUCGCUCCAACACAUUGC-CCCAUUGCGGGGG-CCGUGUCACAUGA-CCAGCAC (((((((((((.....-----.....((((((((((..(--------(((.....)))))))))).))))...((-(((......))))-)..))))))))))-)...... ( -43.40, z-score = -2.06, R) >droEre2.scaffold_4770 1688171 95 - 17746568 GUCGUGUGACAGAGAG-----UGCGAGUGUGGGGUGCAG--------GGCUAGUCGUCUCGCUCCAACACAUUGC-CCCGUUGCGGGGG-CCGUGUCACAUGA-CCAGCAC (((((((((((.....-----.....((((((((((..(--------(((.....)))))))))).))))...((-(((......))))-)..))))))))))-)...... ( -43.60, z-score = -1.89, R) >droAna3.scaffold_13088 61721 100 + 569066 -UCGUGUGACAGAGUGCG---AGUGCGAGUGCGGCGGCACAA-----CUCUAGUCGUCUCGCUCCAACGCAUAGGCCCCAUUGCGGGGG-CCGUGUCACAUGA-CCAAAAU -((((((((((..(((((---..((.(((((.((((((....-----.....)))))).))))))).))))).((((((......))))-)).))))))))))-....... ( -51.60, z-score = -4.87, R) >dp4.chr2 7417108 105 + 30794189 GUCGUGUGACAGAGAG-----UGUGGAGGGGCAGCAUCGCAAACACCCACUAGUUGUCUCGCUUCAACACACGGUACUCAAUGGUGGAGUCCAUGUCACAUGA-CCAACAC (((((((((((....(-----((((..((((((((.................)))))))).......)))))((.((((.......)))))).))))))))))-)...... ( -38.43, z-score = -1.73, R) >droPer1.super_3 1227507 105 + 7375914 GUCGUGUGACAGAGAG-----UGUGGAGGGGCAGCAUCGCAAACACCCACUAGUUGUCUCGCUUCAACACACGGUACUCAAUGGUGGAGCCCAUGUCACAUGA-CCAACAC (((((((((((((((.-----.((((..(.((......))...)..))))......))))((((((...((..(....)..)).))))))...))))))))))-)...... ( -36.90, z-score = -1.25, R) >droWil1.scaffold_181108 3219884 109 + 4707319 GUCGUGUGACAGAGAGGGUUAUGGGGAGCAGCAGCAUCGU-AGCCCCCGCUAGUUGUCUCGCUUUAACACAUUGC-CUGAAUGUGGGGGAGCAUGUCACAUGACCCAAUAC (((((((((((((((.(..(((((((.((.((......))-.))))))).))..).))))(((((..((((((..-...))))))..))))).)))))))))))....... ( -50.90, z-score = -4.80, R) >droVir3.scaffold_13047 11655441 94 + 19223366 GUCGUGUGACAGUG-------CUCGCACUAGUGUAUUGGCUG-----CGCUAGUCGUCUCUCUUUAACACAUUGC-UCAAGUGUAGU---GCGUGUCACAUGA-CCAAUAA ((((((((((((..-------((((.(((((((((.....))-----)))))))))............(((((..-...))))))).---.).))))))))))-)...... ( -35.90, z-score = -3.35, R) >droMoj3.scaffold_6540 30622518 94 + 34148556 GUCGUGUGACUGCG-------UUGGCAAUAGGGGGUUCGGUG-----CUCUAGUCGUCUCGCUUUAGCACACAGC-UCAAAUGUAAU---AUCUGUCACAUGA-CCAAUAA (((((((((((((.-------...)))(((..(((((..(((-----((..(((......)))..)))))..)))-))...)))...---....)))))))))-)...... ( -32.00, z-score = -2.92, R) >droGri2.scaffold_14830 2846253 94 + 6267026 GUCGUGUGACAGGG-------UCGACAAUAGCGAGUUCGCUG-----UCACAGUUGUCUCGCUUUUGCACAUUGC-UCGGGUCUAGU---GCGUGUCACAUGA-CCAAUAA ((((((((((((((-------.((((.((((((....)))))-----)....)))).)))......((((...((-....))...))---)).))))))))))-)...... ( -36.50, z-score = -2.87, R) >consensus GUCGUGUGACAGAGAG_____UGCGAAUGUGGGGUGUCG________CGCUAGUCGUCUCGCUCCAACACAUUGC_CCCAAUGCGGGGG_CCGUGUCACAUGA_CCAACAC .(((((((((((((...........................................))).........................((...)).))))))))))........ (-11.32 = -11.09 + -0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:35 2011