| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,369,234 – 1,369,333 |
| Length | 99 |
| Max. P | 0.616340 |
| Location | 1,369,234 – 1,369,333 |
|---|---|
| Length | 99 |
| Sequences | 14 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.12 |
| Shannon entropy | 0.45722 |
| G+C content | 0.54899 |
| Mean single sequence MFE | -32.93 |
| Consensus MFE | -20.17 |
| Energy contribution | -19.24 |
| Covariance contribution | -0.93 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616340 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1369234 99 - 27905053 ---------------------GAAUCUGGUGCUGGUCCUGGAACAUGAUGUUCCUGCUUGGCAUACUAGUUCCGUGGUGCAGUCCCCUCGGACUGCGCGCCCUCUGCUGUGUGAAGCCUU ---------------------......((.......)).(((((.....))))).((((.(((((.(((....(((.((((((((....)))))))))))...))).))))).))))... ( -35.10, z-score = -1.94, R) >droSim1.chr3R 1404190 99 - 27517382 ---------------------GCAUCUGGUGCUGGUCGUGGAACAUGAUGUUUCUGCUUGGCAUACUAGUUCCGUGGUGCAGUCCCCUCGGACUGCGCGCCCUCUGCUGUGUGAAGCCUU ---------------------(((...(((((...(((((((((...(((((.......)))))....))))))))).(((((((....))))))))))))...)))............. ( -34.90, z-score = -1.11, R) >droSec1.super_6 1483470 99 - 4358794 ---------------------GCAUCUGGUGCUGGUCGUGGAACAUGAUGUUUCUGCUUGGCAUACUAGUUCCGUGGUGCAGUCCCCUCGGACUGCGCGCGCUCUGCUGUGUGAAGCCUU ---------------------((((...))))..((((((...))))))......((((.(((((.(((...((((.((((((((....))))))))))))..))).))))).))))... ( -37.10, z-score = -1.38, R) >droYak2.chr3R 1782040 99 - 28832112 ---------------------GUAUAUGGUGCUGGUCUUGGAAUAUGAUGUUCCUGCUUGGCAUACUAGUUCCGUGGUGCAGUCCACUCGGAUUGCGCGCCCUGUGCUGUGUGAAACCUU ---------------------.(((((((..(.(((...(((((...(((((.......)))))....)))))...(((((((((....))))))))))))..)..)))))))....... ( -33.50, z-score = -1.96, R) >droEre2.scaffold_4770 1637303 99 - 17746568 ---------------------GAAUCUGGUGCUGGUCUUGGAACAUGAUGUUCCUGCUUGGCAUACUAGUUCCGUGGUGCAGUCCACUCGGAUUGCGCGCCCUCUGCUGUGUGAAGCCUU ---------------------..................(((((.....))))).((((.(((((.(((....(((.((((((((....)))))))))))...))).))))).))))... ( -33.30, z-score = -1.30, R) >droAna3.scaffold_13340 23509389 99 - 23697760 ---------------------GCAUCUGGUGCUGGUCCUGGAACAUGAUGUAUCUUCUCGGAAUUCUUGUGCCCUGGUGUAGUCCCCUGGGACUGAGAGCCCUCUGUUGCGUUAAGCCCU ---------------------(((...((..(.(((((.((((.(((...))).)))).)))...)).)..))..(((.((((((....))))))...)))......))).......... ( -26.40, z-score = 0.29, R) >dp4.chr2 9566333 99 + 30794189 ---------------------GCAUCUGGUGCUGGUCGUGGAAUAUGAUGUUCCUGCUCGGUAUACUCGUCCCCUGGUGCAGUCCUCUGGGACUGCGCGCCCUCUGCUAUGUGAAGCCCU ---------------------(((...(((((((..((.(((((.....)))))))..))))..............(((((((((....))))))))))))...)))............. ( -32.50, z-score = -0.92, R) >droPer1.super_3 3370360 99 + 7375914 ---------------------GCAUCUGGUGCUGGUCGUGGAAUAUGAUGUUCCUGCUCGGUAUACUCGUCCCCUGGUGCAGUCCUCUGGGACUGCGCGCCCUCUGCUAUGUGAAGCCCU ---------------------(((...(((((((..((.(((((.....)))))))..))))..............(((((((((....))))))))))))...)))............. ( -32.50, z-score = -0.92, R) >droWil1.scaffold_181089 1772802 99 + 12369635 ---------------------GAACUUGGUGUUGGACAUGGAACAUGAUGUUUUUGCUUGGUAUCCUAGUGCCCUGGUGUAGUCCUCUUGGAAUACGAGCACUUUGCUGCGUGAAACCGU ---------------------......(((....(((((........)))))((..(.(((((....(((((.....((((.(((....))).)))).))))).))))).)..))))).. ( -22.60, z-score = 0.60, R) >droVir3.scaffold_13047 2558952 99 + 19223366 ---------------------GAACCUGGUGCUGGACUUGGAACAUGAUGUUCCUCCUCGGCAUUCUUGUUCCCUGGUGCAGCCCGCUCGGGCUGCGCGCCCUCUUCUGCAUCAAGCCGU ---------------------.....((((((.((((..((((((.((((((.......))))))..))))))..)(((((((((....)))))))))....)))...))))))...... ( -39.60, z-score = -2.74, R) >droMoj3.scaffold_6540 21176697 99 + 34148556 ---------------------GCACCUGGUGCUGGACUUGGAACAUGAUGUUUUUGCUCGGAAUUCUUGUGCCCUGGUGUAGUCCGCUGGGAUUGCGGGCACUCUUCUGCAUUAAGCCCU ---------------------((((...)))).((.((((((((.....)))).(((..((((.....((((((....(((((((....)))))))))))))..))))))).)))).)). ( -29.90, z-score = -0.04, R) >droGri2.scaffold_14906 11089636 99 + 14172833 ---------------------GCACCUGGUGCUGGACUUGGAAUAUGAUGUUCCUGCUCGGCAUCCUGGUGCCCUGGUGCAGUCCCCUUGGACUGCGCGCCCUCUUCUGCAUUAAGCCUU ---------------------(((((.(((((((..(..(((((.....))))).)..)))))))..)))))....(((((((((....)))))))))((........)).......... ( -42.50, z-score = -4.07, R) >anoGam1.chr2R 5053317 99 + 62725911 ---------------------GCACCUGGACCUGGACCUGGAACAUAAUGUUCUUGCUCGGUGUCAUCGUGCCCUGGUGCAGUCCACUCGGUUUGCGUGCCCUGUUCUGUAAGAAACCAU ---------------------((((...((((((..(..(((((.....))))).)..))).)))...))))..((((((((..((...(((......))).))..)))).....)))). ( -28.50, z-score = -0.29, R) >apiMel3.Group1 6213393 120 - 25854376 GUUGGAUUAAUUACGUAGCUAGAACGUGGUGUUGGACAUGGAAUGCAAUGUUUCUACUAGGCGUAGCAGUACCAUGGUGUAGUCCAGUUUCCAUACGAGCUUUACUACUCGUACAACCUU .(((((((((((((((.......)))))))......(((((..(((.((((((.....)))))).)))...)))))...))))))))......((((((........))))))....... ( -32.60, z-score = -0.58, R) >consensus _____________________GCAUCUGGUGCUGGUCUUGGAACAUGAUGUUCCUGCUCGGCAUACUAGUUCCCUGGUGCAGUCCCCUCGGACUGCGCGCCCUCUGCUGUGUGAAGCCUU ...........................((((((((....(((((.....)))))...)))))...............((((((((....))))))))..................))).. (-20.17 = -19.24 + -0.93)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:31 2011