| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,280,274 – 1,280,331 |
| Length | 57 |
| Max. P | 0.633020 |
| Location | 1,280,274 – 1,280,331 |
|---|---|
| Length | 57 |
| Sequences | 3 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 91.72 |
| Shannon entropy | 0.11277 |
| G+C content | 0.50292 |
| Mean single sequence MFE | -12.25 |
| Consensus MFE | -12.12 |
| Energy contribution | -11.90 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.10 |
| Mean z-score | -0.83 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633020 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1280274 57 + 27905053 GCUGAUAAAAAACAAACACCCGCCCAAUUGGCACGGCCAUCGCAAUCGCAAUGGCAA .....................(((.....)))...(((((.((....)).))))).. ( -13.70, z-score = -1.14, R) >droSim1.chr3R 1312209 55 + 27517382 GCUGAUAAAAAACAAACAACCGCCCAAUUGGCACGGCCAUCGCAAUCGCAAUGGC-- .....................(((.....)))...(((((.((....)).)))))-- ( -12.00, z-score = -0.79, R) >droSec1.super_6 1394482 55 + 4358794 GCUGAUAUAAAACCAACAAUCGCUCAAUUGGCACGGCCAUCGCAAUCGCAAUGGC-- ((..((....................))..))...(((((.((....)).)))))-- ( -11.05, z-score = -0.57, R) >consensus GCUGAUAAAAAACAAACAACCGCCCAAUUGGCACGGCCAUCGCAAUCGCAAUGGC__ .....................(((.....)))...(((((.((....)).))))).. (-12.12 = -11.90 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:26 2011