| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,264,297 – 1,264,349 |
| Length | 52 |
| Max. P | 0.893756 |
| Location | 1,264,297 – 1,264,349 |
|---|---|
| Length | 52 |
| Sequences | 7 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 93.22 |
| Shannon entropy | 0.12470 |
| G+C content | 0.36538 |
| Mean single sequence MFE | -11.83 |
| Consensus MFE | -11.44 |
| Energy contribution | -10.71 |
| Covariance contribution | -0.73 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.893756 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1264297 52 + 27905053 UUUUGUGGUUUAUCUUUUGUAAUUAGACAAUGGCAAGGCACAGAGCUUGAAU (((((((.(((..(..((((......)))).)..))).)))))))....... ( -10.40, z-score = -1.00, R) >droSim1.chr3R 1299834 52 + 27517382 UUUUGUGGUUUAUCUUUUGUAAUUAGACAAUGGCAAGGCACAGAGCUUGAAU (((((((.(((..(..((((......)))).)..))).)))))))....... ( -10.40, z-score = -1.00, R) >droSec1.super_6 1384972 52 + 4358794 UUUUGUGGUUUAUCUUUUGUAAUUAGACAAUGGCAAGGCACAAAGCUUGAAU (((((((.(((..(..((((......)))).)..))).)))))))....... ( -10.30, z-score = -1.12, R) >droYak2.chr3R 1672146 52 + 28832112 UUUUGUGGCUUAUCUUUUGUAAUUAGACAAUGGCAGGGCACAGAGCUUGAAA (((((((.(((..(..((((......)))).)..))).)))))))....... ( -12.70, z-score = -1.47, R) >droEre2.scaffold_4770 1534584 52 + 17746568 UUUUGUGGCUUAUCUUUUGUAAUUAGACAAUGGCAAGCCACAGAGCUUGAAU (((((((((((..(..((((......)))).)..)))))))))))....... ( -17.60, z-score = -3.64, R) >dp4.chr2 9465119 52 - 30794189 UUUUGUGGUUUAUCUUUUGUAAUUAGACAAUGGCGGGGCACAGAGCCAGAAA (((((((.((..((..((((......)))).))..)).)))))))....... ( -10.60, z-score = -0.76, R) >droPer1.super_3 3263122 52 - 7375914 UUUUGUGGUUUAUCUUUUGUAAUUAGACAAUGGCGAGGCACAGAGCCAGAAA (((((((.(((..(..((((......)))).)..))).)))))))....... ( -10.80, z-score = -1.07, R) >consensus UUUUGUGGUUUAUCUUUUGUAAUUAGACAAUGGCAAGGCACAGAGCUUGAAU (((((((.(((..(..((((......)))).)..))).)))))))....... (-11.44 = -10.71 + -0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:25 2011