| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,244,687 – 1,244,792 |
| Length | 105 |
| Max. P | 0.672517 |
| Location | 1,244,687 – 1,244,792 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 73.52 |
| Shannon entropy | 0.48112 |
| G+C content | 0.42014 |
| Mean single sequence MFE | -27.83 |
| Consensus MFE | -12.17 |
| Energy contribution | -14.32 |
| Covariance contribution | 2.16 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.672517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1244687 105 + 27905053 AUUCAAUGCGUUCAAUUUCAAUGCAAUUGAAUCGACUUCGGGUUUGGUUGGCGA-GCUGAUUAUUCGGAUUACGCAAGCGGAUAAUGUCCU-UUAGACACUAAAUCC---------- ((((((((((((.......))))).))))))).......(((((((((.((((.-.((((....))))....)))....((((...)))).-.....))))))))))---------- ( -26.20, z-score = -1.08, R) >droSim1.chr3R 1282855 105 + 27517382 AUUCAAUGCGUUCAAUUUCAAUGCAAUUGAAUCGACUUCGGGCUUGGCUGGCGA-GCUCAUUAUUCGGAUUACGCAAGCGGAUAAUGUCCU-UUAGCCACUAAAUCC---------- ((((((((((((.......))))).))))))).......((..((((.((((((-(..(((((((((.....(....))))))))))..))-)..))))))))..))---------- ( -30.50, z-score = -2.20, R) >droSec1.super_6 1362325 105 + 4358794 AUUCAAUGCGUUCAAUUUCAACGCAAUUGAAUCGACUUCGGGCUUGGCUGGCGA-GCUCAUUAUUCGGAUUACGCAAGCGGAUAAUGUCCU-UUAGCCACUAAAUCC---------- ((((((((((((.......))))).))))))).......((..((((.((((((-(..(((((((((.....(....))))))))))..))-)..))))))))..))---------- ( -32.30, z-score = -2.84, R) >droYak2.chr3R 1643419 105 + 28832112 AUUCAAUGCGUUCAAUUUCAAUGCAAUUGACCCGAGUUCGGGUUUGGCUAGGAA-GCUCAUUAUUCGGAUUACGCAAGCGGAUAAUGUCUU-UUAUCAACUAAAUCC---------- ..((((((((((.......))))).)))))((((....))))(((((...((((-(..(((((((((.....(....)))))))))).)))-)).....)))))...---------- ( -24.90, z-score = -1.27, R) >droEre2.scaffold_4770 1514099 92 + 17746568 AUUCAAUGCGUUCAAUUUCAAUGCAAUUGACCCGAGUUCCGGCUUGGCUGGCAA-GCUCAUUACUC-------------GGAUAAUGUCUU-UUGGCAACUAAAUCU---------- ..((((((((((.......))))).))))).((((((...((((((.....)))-)))....))))-------------))....((((..-..)))).........---------- ( -26.20, z-score = -2.59, R) >droAna3.scaffold_13340 19754829 117 - 23697760 CUGCAUUGCGUUGAAUUUGAAUGCAAUCGAUCCAACUCGGGAUGGGACACACAAAGCUCAUUAUGUGGACUGAAUAUGCAAACUUUGUUCCACUUUGGAUUGAGUAAAAAUAUACCC .(((.(((((((.......)))))))(((((((((.....((((((.(.......)))))))..(((((..(((.........)))..))))).))))))))))))........... ( -26.90, z-score = -0.95, R) >consensus AUUCAAUGCGUUCAAUUUCAAUGCAAUUGAACCGACUUCGGGCUUGGCUGGCAA_GCUCAUUAUUCGGAUUACGCAAGCGGAUAAUGUCCU_UUAGCCACUAAAUCC__________ ..((((((((((.......))))).))))).........(((.((((.((((......(((((((((...........)))))))))........)))))))).))).......... (-12.17 = -14.32 + 2.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:22 2011