| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,230,751 – 1,230,806 |
| Length | 55 |
| Max. P | 0.899359 |
| Location | 1,230,751 – 1,230,806 |
|---|---|
| Length | 55 |
| Sequences | 7 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 86.99 |
| Shannon entropy | 0.23219 |
| G+C content | 0.34205 |
| Mean single sequence MFE | -8.96 |
| Consensus MFE | -6.93 |
| Energy contribution | -7.16 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.899359 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1230751 55 - 27905053 CGACGAUAAUUGCUAGCAAUCAGCUAGCUGGAACAAUAAAAAUCGACAAAAAAAA ...((((....((((((.....))))))((......))...)))).......... ( -9.70, z-score = -2.53, R) >droSim1.chr3R 1268388 55 - 27517382 CGACGAUAAUUGCUAGCAAUCAGCUAGCUGGAACAAUAAAAAUCGACAAAAAAAA ...((((....((((((.....))))))((......))...)))).......... ( -9.70, z-score = -2.53, R) >droSec1.super_6 1347962 54 - 4358794 CGACGAUAAUUGCUAGCAAUCAGCUAGCUGGAACAAUAAAAAUCGACACAAAAA- ...((((....((((((.....))))))((......))...)))).........- ( -9.70, z-score = -2.46, R) >droYak2.chr3R 1623193 53 - 28832112 CGACGAUAAUUGCUAGUAAUCACCUAGCUGGAACAAUAAAAAUCGAAAAAAAA-- ...((((.(((((((((.........)))))..))))....))))........-- ( -5.90, z-score = -1.47, R) >droEre2.scaffold_4770 1499387 53 - 17746568 CGACGAUAAUUGCUAGCAAUCAGCUAGCUGGAACAAUAAAAAUCGACAAAAAA-- ...((((....((((((.....))))))((......))...))))........-- ( -9.70, z-score = -2.42, R) >dp4.chr2 9426984 52 + 30794189 CGUAUAUAAUUGCUGGCAAUCAGCUAG-UGGAACAAUAAAAACUUAACCAAAA-- .........(..(((((.....)))))-..)......................-- ( -9.00, z-score = -1.75, R) >droPer1.super_3 3224932 52 + 7375914 CGUAUAUAAUUGCUGGCAAUCAGCUAG-UGGAACAAUAAAAACUUAACCAAAA-- .........(..(((((.....)))))-..)......................-- ( -9.00, z-score = -1.75, R) >consensus CGACGAUAAUUGCUAGCAAUCAGCUAGCUGGAACAAUAAAAAUCGACAAAAAA__ ...........((((((.....))))))........................... ( -6.93 = -7.16 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:21 2011