| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,222,306 – 1,222,396 |
| Length | 90 |
| Max. P | 0.610619 |
| Location | 1,222,306 – 1,222,396 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 94.33 |
| Shannon entropy | 0.07652 |
| G+C content | 0.25718 |
| Mean single sequence MFE | -10.19 |
| Consensus MFE | -10.19 |
| Energy contribution | -10.19 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.80 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.610619 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1222306 90 - 27905053 AUCUUCUGCACUGCCUAAAUCAGUUGUUUUAUCAUGUAAUUAUCAUCAAAAAAAUAUAUGUAAGUGUAUGAUUUAUGUAUAUCAUUCUCA------ ...........(((.(((((((.....((((.((((((................))))))))))....))))))).)))...........------ ( -10.19, z-score = -0.33, R) >droSim1.chr3R 1240794 96 - 27517382 AUCUUCUGCACUGCCUAAAUCAGUUGUUUUAUCAUGUAAUUAUCAUCAAAAAAAUAUAUGUAAGUUUAUGAUUUAUGUAUCUCAUUCUCAUUCUCA ...........(((.(((((((.....((((.((((((................))))))))))....))))))).)))................. ( -10.19, z-score = -1.05, R) >droSec1.super_6 1339663 90 - 4358794 AUCUUCUGCACUGCCUAAAUCAGUUGUUUUAUCAUGUAAUUAUCAUCAAAAAAAUAUAUGUAAGUUUAUGAUUUAUGUAUCUCAUUCUCA------ ...........(((.(((((((.....((((.((((((................))))))))))....))))))).)))...........------ ( -10.19, z-score = -1.02, R) >consensus AUCUUCUGCACUGCCUAAAUCAGUUGUUUUAUCAUGUAAUUAUCAUCAAAAAAAUAUAUGUAAGUUUAUGAUUUAUGUAUCUCAUUCUCA______ ...........(((.(((((((.....((((.((((((................))))))))))....))))))).)))................. (-10.19 = -10.19 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:21 2011